View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_high_15 (Length: 506)
Name: NF19289_high_15
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Complemental strand, 13634989 - 13634543
Alignment:
| Q |
17 |
actttgaagagaaaattcttgctggtgaatttgatgaaagtgagaagtacctcagtgcctttatcaatatcactgacagtccaagctccatgaaaatgtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13634989 |
actttgaagagaaaattcttgctggtgaatttgatgaaagtgagaagtacctcagtgcctttatcaatatcactgacagtccaagctccatgaaaatgtt |
13634890 |
T |
|
| Q |
117 |
ctttgagattaggaagcaaaagtatcttgaagccttggacaggtagtgctccttatttttatctttatctttatcatggcatcattatcattagggtttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13634889 |
ctttgagattaggaagcaaaagtatcttgaagccttggacaggtagtgctccttatttttatctttatctttatcatggcatcattatcattagggtttt |
13634790 |
T |
|
| Q |
217 |
aaaaggtagacgtggttaagattgaggtcgctgtgatccttgatattgtgaagaatcacagtcaaatgtgacatcaatcgaagattcttagtggtttcga |
316 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13634789 |
aaaagg---------------------tcactgtgatccttgatattgtgaagaatcacagtcaaatgcgacatcaatcgaagattcttagtggtttcga |
13634711 |
T |
|
| Q |
317 |
taacataaaaaactgttgtgttgtggtctagatcgcactcacaaaactctatttaaaatcctaattataatcagggttttatctctaacaattgccatca |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13634710 |
taacataaaaaactgttgtgttgtggtctagatcgcactcacaaaactctatttaaaatcctaattataatcagggttttatcactaacaattgccatca |
13634611 |
T |
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| Q |
417 |
caattctttatattgttgagaatcaatgtcaaacgtagattcaatcaatatcatgttgtgcaaaaacc |
484 |
Q |
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| T |
13634610 |
caattctttatattgttgagaatcaaagtcgaacgtagattcaatcaatatcatgttgtgcaaaaacc |
13634543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 474
Target Start/End: Original strand, 27532090 - 27532565
Alignment:
| Q |
17 |
actttgaagagaaaattcttgctggtgaatttgatgaaagtgagaagtacctcagtgcctttatcaatatcactgacagtccaagctccatgaaaatgtt |
116 |
Q |
| |
|
||||| |||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
27532090 |
actttcaagagaaaatccttgatggagaatttgatgaaagtgagaagtacctcagtgcctttaccaatatcactgacagtcaaagctccatgaaaatgtt |
27532189 |
T |
|
| Q |
117 |
ctttgagattaggaagcaaaagtatcttgaagccttggacaggtagtgctccttatttttatctttatctttatcatg--------------------gc |
196 |
Q |
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||| ||||||||||||| |||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
27532190 |
ttttcagattaggaagcagaagtatttggaagccttggacaggtagtgctcctt-tttttatctttatctttatcatgacatcattatcatctgcatggc |
27532288 |
T |
|
| Q |
197 |
atcattatcattagggttttaaaaggtagacgtggttaagattgaggtcgctgtgatccttgatattgtgaagaatcacagtcaaatgtgacatcaatcg |
296 |
Q |
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|||||||||||||||||||||||| |||||| | ||||||||||| ||| | |||||||||||||||||||||||||||| ||||||| ||| ||||||| |
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| T |
27532289 |
atcattatcattagggttttaaaaagtagacttcgttaagattgatgtcaccgtgatccttgatattgtgaagaatcacaatcaaatgcgacctcaatcg |
27532388 |
T |
|
| Q |
297 |
aagattcttagtggtttcgataacataaaaaactgttgtgttgtggtctagatcgcactcacaaaactctatttaaaatcctaattataatcagggtttt |
396 |
Q |
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||||||| |||||||||||| ||||||||||| |||||||| ||||| | |||| ||||||||||||||||||||||||||| ||||||||| | ||||| |
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| T |
27532389 |
aagattcatagtggtttcgacaacataaaaaattgttgtgtcgtggttttgatcacactcacaaaactctatttaaaatcct-attataatcggagtttt |
27532487 |
T |
|
| Q |
397 |
atctctaacaattgccatcacaattctttatattgttgagaatcaatgtcaaacgtagattcaatcaatatcatgttg |
474 |
Q |
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||| ||||| |||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||| |||||||| |
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| T |
27532488 |
atcactaacgattgccatcacaattcttgatattgttaggaatcgtaatcaaatgtagattcaatcaatgtcatgttg |
27532565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 13644341 - 13644290
Alignment:
| Q |
112 |
atgttctttgagattaggaagcaaaagtatcttgaagccttggacaggtagt |
163 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
13644341 |
atgttctttgagattaggaagcagaagtattttgaagccttggacaggtagt |
13644290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 13689935 - 13689792
Alignment:
| Q |
19 |
tttgaagagaaaattcttgctggtgaatttgatgaaagtgagaagtacctcagtgcctttatcaatatcactgacagtccaagctccatgaaaatgttct |
118 |
Q |
| |
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|||||||||||||| |||||||| || | ||||| ||||||||||||||| || |||| |||| | ||| | | | |||||||||||||| ||| |
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| T |
13689935 |
tttgaagagaaaatccttgctggagattgggatgagtgtgagaagtacctcaatggttttacaaatactaatgaaaatgaaggctccatgaaaatgctct |
13689836 |
T |
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| Q |
119 |
ttgagattaggaagcaaaagtatcttgaagccttggacaggtag |
162 |
Q |
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| T |
13689835 |
ttgagattaggaagcaaaaatattatgaagtcttggagaggtag |
13689792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 47414882 - 47414833
Alignment:
| Q |
106 |
atgaaaatgttctttgagattaggaagcaaaagtatcttgaagccttgga |
155 |
Q |
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||||| || ||||| |||||||||||||| |||||||||||||| ||||| |
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| T |
47414882 |
atgaagattttcttcgagattaggaagcagaagtatcttgaagcgttgga |
47414833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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