View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19289_high_2 (Length: 1324)
Name: NF19289_high_2
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 874; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 874; E-Value: 0
Query Start/End: Original strand, 411 - 1308
Target Start/End: Complemental strand, 44378389 - 44377492
Alignment:
| Q |
411 |
tgtcatattaacatattgcatgttcaaacttatttctatgttgctggtgctattgcagttctaccaagacccatggatcctaataaagatttggctgttt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44378389 |
tgtcatattaacatattgcatgttcaaacttatttctatgttgctggtgctattgcagttctaccaagacccatggatcctaataaagatttggctgttt |
44378290 |
T |
|
| Q |
511 |
atggctatggaagtgttgcatggaaagaaagagtggaggaatggaagaaaaagcagaatgaaaaattagaggtggttaagcacgaaggtgacaacaatgt |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44378289 |
atggctatggaagtgttgcatggaaagaaagagtggaggaatggaagaaaaagcagaatgaaaaattagaggtggttaagcacgaaggtgacaacaatgt |
44378190 |
T |
|
| Q |
611 |
tgatgagtttaatgatcccgatttgccaaagtaggtgccattatttaattcttaccatttgatctaaatactcatctggtttatatattgcatgaacttg |
710 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44378189 |
tgatgagtttaatgatcccgatttgccaaagtaagtgctattatttaattcttaccatttgatctaaatactcatctggtttatatattgcacgaacttg |
44378090 |
T |
|
| Q |
711 |
ttgcaaaatccatttcttacatgaacttgtactgttaacagaatggatgaaggaaggcaaccgctatggaggaagttaccaatcagtccaagcaagataa |
810 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44378089 |
ttgcaaaatccatttcttacatgaacttgtactgttaacagaatggatgaaggaaggcaaccgctatggaggaagttaccaatcagtccaagcaagataa |
44377990 |
T |
|
| Q |
811 |
atccatatcgaatcattatagtactccggatcgctgttcttgctctcttttttcattacagaattctccatccggtcaacgatgcatatgcattgtggtt |
910 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44377989 |
atccatatcgaatcattatagtactccggatcgctgttcttgctctcttttttcattacagaattctccatccggtcaacgatgcatatgcattgtggtt |
44377890 |
T |
|
| Q |
911 |
gacatcagtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctccagttgagcgagaaacataccttgatcgttta |
1010 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44377889 |
gacatcagtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctccagttgagcgagaaacataccttgatcgttta |
44377790 |
T |
|
| Q |
1011 |
tcactgaggtacgagaaagaaggaaagccgtgtgaattatctgatattgacatatttgttagtactgtggatcctatgaaagagcctcctcttataactg |
1110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44377789 |
tcactgaggtacgagaaagaaggaaagccgtgtgaattatccgatattgacatatttgttagtactgtggatcctatgaaagagcctcctcttataactg |
44377690 |
T |
|
| Q |
1111 |
caaacacagttctgtccatcctagcagtagattatccggtggaaaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaagccct |
1210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44377689 |
caaacacagttctgtccatcctagcagtagattatccggtggaaaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaagccct |
44377590 |
T |
|
| Q |
1211 |
ttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaagttcagcatcgaaccacgggctcctgagtggtattttgctcagaaggttg |
1308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44377589 |
ttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaagttcagcattgaaccgcgggctcctgagtggtattttgctcagaaggttg |
44377492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 44378787 - 44378434
Alignment:
| Q |
11 |
tcatcacattactgaggccatgttcttttctcacctcaacaatatcagtcggagttcacaaatgaatgcttcaagaatcaccacgccatcagagtttgac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44378787 |
tcatcacattactgaggccatgttcttttctcacctcaacaatatcggtcggagttcacaaatgaatgcttcaagaatcaccacgccatcagagtttgac |
44378688 |
T |
|
| Q |
111 |
acggcttctgtggctgctgatatctctctcctgacatatgatcatgaggttgaggttaattaattttcaagtctgttgttcacttgttcttgatttgttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44378687 |
acggcttctgtggctgctgatatctctctcctgacatatgatcatgaggttgaggttaattaattttcaagtctgttgttca--agttcttgatttgttt |
44378590 |
T |
|
| Q |
211 |
atataatttctagcttttatttgtctaattatgaattttgttatttaaggatcctgggatttcttctgataaacatgctctcattatccctccatacaag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44378589 |
atataatttctagcttttatttgtctaattatgaattttgttatttaaggatcctgggatttcttctgataaacatgctctcattatccctccatacaag |
44378490 |
T |
|
| Q |
311 |
ctccgcgggaaacgggttcatcctatgccttttcctgattcatttgtgccgggtaa |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44378489 |
ctccgcgggaaacgggttcatcctatgccttttcctgattcatttgtgccgggtaa |
44378434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 4e-32; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 858 - 1021
Target Start/End: Complemental strand, 38721508 - 38721345
Alignment:
| Q |
858 |
ttttttcattacagaattctccatccggtcaacgatgcatatgcattgtggttgacatcagtaatatgtgaaatttggtttgctgtatcatggattttgg |
957 |
Q |
| |
|
||||| ||||| |||||||||||||| || || |||||||||| |||||| |||||||||| ||||||||||| |||||||||||||| ||||| ||| |
|
|
| T |
38721508 |
tttttccattatagaattctccatccagttaatgatgcatatggcttgtggctgacatcagtcatatgtgaaatatggtttgctgtatcttggataatgg |
38721409 |
T |
|
| Q |
958 |
atcagtttccaaaatggtctccagttgagcgagaaacataccttgatcgtttatcactgaggta |
1021 |
Q |
| |
|
|||||||||||||||||| ||| | ||||||||| |||||||| ||| | ||||||||||| |
|
|
| T |
38721408 |
atcagtttccaaaatggtacccaataacgcgagaaacgtaccttgaccgtctttcactgaggta |
38721345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 1065 - 1258
Target Start/End: Complemental strand, 38721198 - 38721005
Alignment:
| Q |
1065 |
tttgttagtactgtggatcctatgaaagagcctcctcttataactgcaaacacagttctgtccatcctagcagtagattatccggtggaaaaagtggcgt |
1164 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||| || || || |||||||| ||||| || ||||| || || || ||||| || || ||||| || | |
|
|
| T |
38721198 |
tttgtcagtactgttgatcctatgaaagaacctccactgatcacagcaaacactgttctatctatccttgctgttgactatccagttgataaagttgcat |
38721099 |
T |
|
| Q |
1165 |
gctatgtctcagacgacggtgcagctatgctaacatttgaagccctttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaa |
1258 |
Q |
| |
|
||||||| || || || ||||| ||||||||||| |||||||| ||||| || || || || ||||| || || |||||||| || |||||||| |
|
|
| T |
38721098 |
gctatgtttcggatgatggtgctgctatgctaacttttgaagcactttctgagacatctgaatttgctaggaagtgggttccgttttgcaagaa |
38721005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1164 - 1260
Target Start/End: Complemental strand, 13826346 - 13826250
Alignment:
| Q |
1164 |
tgctatgtctcagacgacggtgcagctatgctaacatttgaagccctttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaagt |
1260 |
Q |
| |
|
|||||||| || || ||||| || |||||| | ||||||||||| ||| | ||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13826346 |
tgctatgtttctgatgacggcgccgctatgttgacatttgaagctcttgctgaaacatcagagtttgcaagaaaatgggttccattcaccaagaagt |
13826250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 473 - 609
Target Start/End: Complemental strand, 38721885 - 38721749
Alignment:
| Q |
473 |
accaagacccatggatcctaataaagatttggctgtttatggctatggaagtgttgcatggaaagaaagagtggaggaatggaagaaaaagcagaatgaa |
572 |
Q |
| |
|
||||||||| |||| ||| || ||||| | || || ||||| ||||||||||| || |||||||| || |||||||||||||||||| ||| | ||| |
|
|
| T |
38721885 |
accaagaccgatggttccgaagaaagacattgcggtatatggatatggaagtgtggcttggaaagaccgaatggaggaatggaagaaaaggcaaagtgac |
38721786 |
T |
|
| Q |
573 |
aaattagaggtggttaagcacgaaggtgacaacaatg |
609 |
Q |
| |
|
||| | ||||||| ||||| |||||||| ||||||| |
|
|
| T |
38721785 |
aaacttcaggtggtgaagcatgaaggtgataacaatg |
38721749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 904 - 983
Target Start/End: Complemental strand, 35927425 - 35927346
Alignment:
| Q |
904 |
tgtggttgacatcagtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctccagtt |
983 |
Q |
| |
|
||||||||||||| | |||||||| ||||||||||| | || ||| | ||||||||||| || ||||||||||||||| |
|
|
| T |
35927425 |
tgtggttgacatctattatatgtgagatttggtttgcattttcctgggtgttggatcagttccctaaatggtctccagtt |
35927346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 892 - 961
Target Start/End: Complemental strand, 13826704 - 13826635
Alignment:
| Q |
892 |
atgcatatgcattgtggttgacatcagtaatatgtgaaatttggtttgctgtatcatggattttggatca |
961 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||| || ||||||||||| |||| ||||| |||||||| |
|
|
| T |
13826704 |
atgcatatgcattatggttggtatcagttatatgcgagatttggtttgccatatcctggatattggatca |
13826635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 904 - 979
Target Start/End: Complemental strand, 49592582 - 49592507
Alignment:
| Q |
904 |
tgtggttgacatcagtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctcc |
979 |
Q |
| |
|
|||||||||| ||||| || ||||| ||||||||||| | || |||||||||||||||||||||||||||||||| |
|
|
| T |
49592582 |
tgtggttgacttcagttatctgtgagatttggtttgcattttcctggattttggatcagtttccaaaatggtctcc |
49592507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 1110 - 1295
Target Start/End: Complemental strand, 1177585 - 1177400
Alignment:
| Q |
1110 |
gcaaacacagttctgtccatcctagcagtagattatccggtggaaaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaagccc |
1209 |
Q |
| |
|
|||||||||||||| || || |||||| ||||||| || | ||||| ||| | || ||||| || || || || ||||| ||| |||||||||| || |
|
|
| T |
1177585 |
gcaaacacagttctatcaattctagcaatagattaccctgctgaaaaggtgtcatgttatgtttctgatgatggagcagcaatgttaacatttgaggcat |
1177486 |
T |
|
| Q |
1210 |
tttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaagttcagcatcgaaccacgggctcctgagtggtatttt |
1295 |
Q |
| |
|
| || |||||||| || |||||||| ||||||||||| || || |||||||||| ||| ||||| | ||||| || ||||||||| |
|
|
| T |
1177485 |
tatctgaaacttctgaatttgcaaggaaatgggttcctttttgtaagaagttcaacattgaacctagagctccagaatggtatttt |
1177400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1167 - 1258
Target Start/End: Original strand, 9477841 - 9477932
Alignment:
| Q |
1167 |
tatgtctcagacgacggtgcagctatgctaacatttgaagccctttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaa |
1258 |
Q |
| |
|
|||||||| || || ||||| |||||| | ||||||||||| ||| | || || ||||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
9477841 |
tatgtctctgatgatggtgctgctatgttgacatttgaagctcttgccgagacatcagaatttgcaaggaaatgggttcctttctgcaagaa |
9477932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 914 - 975
Target Start/End: Original strand, 15170638 - 15170699
Alignment:
| Q |
914 |
atcagtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggt |
975 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||| | ||||||||||||||||||| |
|
|
| T |
15170638 |
atcagtaatatgtgaaatatggtttgcattatcatggatacttgatcagtttccaaaatggt |
15170699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 921 - 1021
Target Start/End: Complemental strand, 54384068 - 54383968
Alignment:
| Q |
921 |
atatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctccagttgagcgagaaacataccttgatcgtttatcactgaggt |
1020 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| | |||||||| || ||||||| ||| |||| |||||||||||||||| ||| | ||||| |||| |
|
|
| T |
54384068 |
atatgtgaaatctggtttgctatatcatggatccttgatcagttccccaaatggtatcctattgatagagaaacataccttgaccgtctttcactcaggt |
54383969 |
T |
|
| Q |
1021 |
a |
1021 |
Q |
| |
|
| |
|
|
| T |
54383968 |
a |
54383968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1221 - 1260
Target Start/End: Complemental strand, 43436291 - 43436252
Alignment:
| Q |
1221 |
tcagagtttgcaagaaaatgggttccattctgcaagaagt |
1260 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
43436291 |
tcagagtttgcgagaaaatgggttcctttctgcaagaagt |
43436252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1089 - 1159
Target Start/End: Original strand, 44632939 - 44633009
Alignment:
| Q |
1089 |
aaagagcctcctcttataactgcaaacacagttctgtccatcctagcagtagattatccggtggaaaaagt |
1159 |
Q |
| |
|
|||||||| |||||| ||||||||||||| || | || ||||| ||||| |||||||| ||||||||||| |
|
|
| T |
44632939 |
aaagagccacctcttgtaactgcaaacaccattttatctatccttgcagttgattatcctgtggaaaaagt |
44633009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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