View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_high_20 (Length: 441)
Name: NF19289_high_20
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Original strand, 1701436 - 1701860
Alignment:
| Q |
17 |
acaaatcacgtgtgcagtttctattgtattcctac---tactactagtacgttcataagttcacaataaaaagattcgtatatgaccaaccaattttaaa |
113 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1701436 |
acaaatcacgtgtgcagtttcttttgtattcctactactactactagtacgttcataagttcacaataaaaagattcgtatatgaccaaccaattttaaa |
1701535 |
T |
|
| Q |
114 |
atatatgctatttttcatgaaaattatgttgtttgatgtgctttattagtataaagagataaggtatcaatcaatatctttctagtttctaatcaatatc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1701536 |
atatatgctatttttcatgaaaattatgttgtttgatgtgctttattagtataaagagataaggtatcaatcaatatctttctagtttctaatcaatatc |
1701635 |
T |
|
| Q |
214 |
tttctagtttttaatagtttttgcaatttcataaaaaagagtgagatagaatattaaattatatataatcattttaataattcgattttgatagcaaatc |
313 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1701636 |
tttcttgtttttaatagtttttgcaatttcataaaaaagagtgagatagaatattaaattatatataatcattttaataattcgattttgatagcaaatc |
1701735 |
T |
|
| Q |
314 |
ataaatcagtaaaataagtctagaannnnnnnnatacaaatgatacatttcctcctaaagtatttagttgactaata-ttttttatttcatataggttct |
412 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||||| |||||||||||||||||||||| |
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| T |
1701736 |
ataaatcagtaaaataagtctagaattttttttatacaaatgataaatttcctcctaaagcattttgttgactaatatttttttatttcatataggttct |
1701835 |
T |
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| Q |
413 |
ctttttagaggtaatattcttcgac |
437 |
Q |
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||||||||||||||| ||||||||| |
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| T |
1701836 |
ctttttagaggtaatcttcttcgac |
1701860 |
T |
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