View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_high_25 (Length: 391)
Name: NF19289_high_25
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_high_25 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 44379154 - 44378764
Alignment:
| Q |
1 |
agacaagaagggaaccaagcttgtcctcactgcaaaactaaatacaaacgcataaagggtaagccttcaaccgacnnnnnnnnnctttactttgttatat |
100 |
Q |
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| T |
44379154 |
agacgagaagggaaccaagcttgtcctcactgcaaaactaaatacaaacgcataaagggtaagccttcaaccgactttttttttctttactttgttatat |
44379055 |
T |
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| Q |
101 |
ataagtggaagaaaaagttttggctaacaaagcagagccaatatttgggtatggcactctgcagttggagacgtaggcacatttggccgaactccctgat |
200 |
Q |
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| T |
44379054 |
ataagtggaagaaaaagttttggctaacaaagcagagccaatatttgggtatggcactctgcagttggagacgtaggcacatttggccgaactccctgat |
44378955 |
T |
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| Q |
201 |
caaatcccgcgtgttatttgtttgtatttttcatatctgtttgcttttgaatgagggttgcttttctaacaatcaggtagtccaagagttgagggtgacg |
300 |
Q |
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| T |
44378954 |
caaatcccgcgtgttatttgtttgtatttttcatatctgtttgcttttgaatgagggttgcttttctaacaatcaggtagtccaagagttgagggtgacg |
44378855 |
T |
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| Q |
301 |
aagaagaggatgggattgatgatttggaaaatgagtttgatattggaagcaatatcaaacatgaccctcatcacattactgaggccatgtt |
391 |
Q |
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| T |
44378854 |
aagaagaggatgggattgatgatttggaaaatgagtttgatattggaagcaatatcaaacatgaccctcatcacattactgaggccatgtt |
44378764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 12478604 - 12478510
Alignment:
| Q |
157 |
ctctgcagttggagacgtaggcacatttggccgaactccctgatcaaatcccgcgtgttatttgtttgtatttttcatatctgtttgcttttgaa |
251 |
Q |
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| T |
12478604 |
ctctgcagtaggagacgtaggcacaattggccaaacaccgtgatcaaatatcgtgtcttcttcgtttgtgtgttttgtatctgttttcttttgaa |
12478510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 3917847 - 3917806
Alignment:
| Q |
211 |
gtgttatttgtttgtatttttcatatctgtttgcttttgaat |
252 |
Q |
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| T |
3917847 |
gtgttatttgtttgtgcttttcatatctgtttacttttgaat |
3917806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 273
Target Start/End: Original strand, 29363125 - 29363244
Alignment:
| Q |
155 |
cactctgcagttggagacgtaggcacatttggccgaactccctgatcaaatcccgcgtgttatttgtttgt-atttttcatatctgtttgcttttgaatg |
253 |
Q |
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| T |
29363125 |
cactctgcagtcagagacgtaggtacatttggccgaacactatgatcaaatctcgtgttttatctgtttgtgttttttcgtatccgtttacttttgaacc |
29363224 |
T |
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| Q |
254 |
agggttgcttttctaacaat |
273 |
Q |
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| T |
29363225 |
agggttgttgttctaacaat |
29363244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 6522140 - 6522066
Alignment:
| Q |
157 |
ctctgcagttggagacgtaggcacatttggccgaactccctgatcaaatcccgcgtgttatttgtttgtattttt |
231 |
Q |
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| T |
6522140 |
ctctgcagtctgagacgtaggcacaattggctgaaccccatgatcaaatctcgagtgttctttgtctgcattttt |
6522066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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