View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_high_28 (Length: 375)
Name: NF19289_high_28
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 38979880 - 38980225
Alignment:
| Q |
17 |
tgtacaactggttatcttattgatttgtatttccatgaatgcagttagaaaatggtgatattatatgctttcagaaagattcatctatggatattgtgaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38979880 |
tgtacaactggttatcttattgatttgtatttccatgaatgcagttagaaaatggtgatattatatgctttcagaaagattcatctatggatattgtgaa |
38979979 |
T |
|
| Q |
117 |
acaaatctgctttcctgatgtgagttcatacttggaatatgtgcacaaacgttatccttatgtggcttcatccttcgaatatatatgtgcacaatcgcca |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38979980 |
acaaatctgctttcctgatgtgagtttatacttggaatatgtgcacaaacgttatccttatgtggcttcatccttcgaatatatatgtgcacaatcacca |
38980079 |
T |
|
| Q |
217 |
ggtattttctgtttctggtttagttaaaaacaatttgtttcgtcaaatgtgatacaaaaatgaatgtttagttaaaagctacccattgattcttatcatg |
316 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38980080 |
ggtattttctgtttgtggtttagttaaaaacaatttgtttcgtcaaatgtgatacaaaaatgaatgtttagttaaaagctacccattgattcttatcatg |
38980179 |
T |
|
| Q |
317 |
tttctaggcgtatcttgatctgaatgttttttccttgttcaggttc |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38980180 |
tttctaggcgtatcttgatctgaatgttttttccttgttcaggttc |
38980225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 39910589 - 39910260
Alignment:
| Q |
17 |
tgtacaactggttatcttattgatttgtatttccatgaatgcagttagaaaatggtgatattatatgctttcagaaagattcatctatggatattgtgaa |
116 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39910589 |
tgtacaacaggttatcttattgatttgtatttccatgaatgcagttagaaaatggtgatattatatgctttcagaaagactcatctatggatattgtgaa |
39910490 |
T |
|
| Q |
117 |
acaaatctgctttcctgatgtgagttcatacttggaatatgtgcacaaacgttatccttatgtggcttcatccttcgaatatatatgtgcacaatcgcca |
216 |
Q |
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||||||| ||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39910489 |
acaaatcccctttcgtgatgtgtgttcatacttggaatatgtgcacaagcgttatccttatgtggcttcatccttcga----atatgtgcacaatcgcca |
39910394 |
T |
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| Q |
217 |
ggtattttctgtttctggtttagttaaaaacaatttgtttcgtcaaatgtgatacaaaaatgaatgtttagttaaaagctacccattgattcttatcatg |
316 |
Q |
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| T |
39910393 |
ggtattttctgtttgtggtttagttaaaaacaatttgtttcgtcaaatgtgatacaaaaatg------------aaagctacccattgattcttatcatg |
39910306 |
T |
|
| Q |
317 |
tttctaggcgtatcttgatctgaatgttttttccttgttcaggttc |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39910305 |
tttctaggcgtatcttgatctgaatgttttttccttgttcaggttc |
39910260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 39897770 - 39897637
Alignment:
| Q |
31 |
tcttattgatttgtatttccatgaatgcagttagaaaatggtgatattatatgctttcagaaagattcatctatggatattgtgaaacaaatctgctttc |
130 |
Q |
| |
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||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||| |||||||||||||| ||| || || |
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| T |
39897770 |
tcttattgattcatttttccatgaatgcagttagaaaatggtgatattatatgccatcaaaaagcttctgctattgatattgtgaaacatatcctctatc |
39897671 |
T |
|
| Q |
131 |
ctgatgtgagttcatacttggaatatgtgcacaa |
164 |
Q |
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| T |
39897670 |
ctgatgtgccttcatacttggaatatgtgcacaa |
39897637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 39857018 - 39856949
Alignment:
| Q |
25 |
tggttatcttattgatttgtatttccatgaatgcagttagaaaatggtgatattatatgctttcagaaag |
94 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39857018 |
tggttttcttattgatttgtttttccatgaatgcagttagaaaatggtgatattatatgctttcagaaag |
39856949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 39864392 - 39864254
Alignment:
| Q |
25 |
tggttatcttattgatttgtatttccatgaatgcagttagaaaatggtgatattatatgctttcagaaagattcatctatggatattgtgaaacaaatct |
124 |
Q |
| |
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||||| |||||||||||| | ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||| ||| ||| | |||||| || |
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| T |
39864392 |
tggttttcttattgatttat-tttccgtgagtgcagttagaaaatggtgatattatatgctttcagaaagcttctaaaatgaataaagagaaacatttcc |
39864294 |
T |
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| Q |
125 |
gctttcctgatgtgagttcatacttggaatatgtgcacaa |
164 |
Q |
| |
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||| |||||||||| ||||||||||||||||||||||||| |
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| T |
39864293 |
gctatcctgatgtgcgttcatacttggaatatgtgcacaa |
39864254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 39847017 - 39846946
Alignment:
| Q |
291 |
aaagctacccattgattcttatcatgtttctaggcgtatcttgatctgaatgttttttccttgttcaggttc |
362 |
Q |
| |
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||||||||||||| ||||||||| ||||||||||| |||||||| ||||||||| |||||||||| |||||| |
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| T |
39847017 |
aaagctacccatttattcttatcctgtttctaggcttatcttgaactgaatgttgtttccttgtttaggttc |
39846946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 39737083 - 39737213
Alignment:
| Q |
34 |
tattgatttgtatttccatgaatgcagttagaaaatggtgatattatatgctttcagaaagattcatctatggatattgtgaaacaaatctgctttcctg |
133 |
Q |
| |
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||||||||||| ||||||||||||||||| | ||||||| |||||||||||||||||||| ||| | |||||| | |||||| || ||| ||| | |
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| T |
39737083 |
tattgatttgtttttccatgaatgcagttgaacaatggtgctattatatgctttcagaaagcttctgcagtggataacgagaaacatttccgctatcccg |
39737182 |
T |
|
| Q |
134 |
atgtgagttcatacttggaatatgtgcacaa |
164 |
Q |
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||||| ||||||| || ||||||||||||| |
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| T |
39737183 |
atgtgccttcatacatgaaatatgtgcacaa |
39737213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 39847183 - 39847065
Alignment:
| Q |
46 |
tttccatgaatgcagttagaaaatggtgatattatatgctttcagaaagattcatctatggatattgtgaaacaaatctgctttcctgatgtgagttcat |
145 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||| |||| ||| |||| |||| | |||||| ||| ||| |||| |||| ||||| |
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| T |
39847183 |
tttctatgaatgcagttagacaatggtgatattatatgctttcaaaaagcttctgctatagatactaagaaacatatccgctatcctaatgttctttcat |
39847084 |
T |
|
| Q |
146 |
acttggaatatgtgcacaa |
164 |
Q |
| |
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|| ||||||||||| |||| |
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| T |
39847083 |
acatggaatatgtgtacaa |
39847065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 37465553 - 37465420
Alignment:
| Q |
31 |
tcttattgatttgtatttccatgaatgcagttagaaaatggtgatattatatgctttcagaaagattcatctatggatattgtgaaacaaatctgctttc |
130 |
Q |
| |
|
|||||||||||||| |||| ||||||||| | ||| |||| |||||||||||||||||||| | | | ||| ||||| || | |||| ||| ||| || |
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|
| T |
37465553 |
tcttattgatttgttcttccgtgaatgcagcttgaagatggagatattatatgctttcagaaggctcctgctacggataatgaggaacatatccgctatc |
37465454 |
T |
|
| Q |
131 |
ctgatgtgagttcatacttggaatatgtgcacaa |
164 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||| |
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|
| T |
37465453 |
ctgatgtgccttcttacttggaatacgtgcacaa |
37465420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 39856824 - 39856755
Alignment:
| Q |
291 |
aaagctacccattgattcttatcatgtttctaggcgtatcttgatctgaatgttttttccttgttcaggtt |
361 |
Q |
| |
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||||||||||| | ||||| ||||||||||||||| |||||||| | ||||||| |||||||||||||||| |
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| T |
39856824 |
aaagctacccagttattctaatcatgtttctaggcttatcttgaac-gaatgttgtttccttgttcaggtt |
39856755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 39737202 - 39737247
Alignment:
| Q |
199 |
atatgtgcacaatcgccaggtattttctgtttctggtttagttaaa |
244 |
Q |
| |
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|||||||||||||||||||||||||||| ||| |||||| ||||| |
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| T |
39737202 |
atatgtgcacaatcgccaggtattttctttttgaggtttatttaaa |
39737247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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