View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19289_high_3 (Length: 1296)
Name: NF19289_high_3
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_high_3 |
 | |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 1156; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1156; E-Value: 0
Query Start/End: Original strand, 18 - 1284
Target Start/End: Original strand, 29121028 - 29122296
Alignment:
| Q |
18 |
ccttgatgatttagtgataacaagtagtccaatataggttgagtttttgccaatttgccactaaaacgtgaagttaagaactttgaaacaaaatggagtc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29121028 |
ccttgatgatttagtgataacaagtagtccaatataggttgagtttttgccaatttgacactaaatcgtgaagttaagaactttgaaacaaaatggagtc |
29121127 |
T |
|
| Q |
118 |
catttccaattgaagaaggcaattttaagttaggaataggaaagtcaaatgctccaaaatctgcttcaagtgcattttcatcgtttgccctacaacataa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29121128 |
catttccaattgaagaaggcaattttaagttaggaataggaaagtcaaatgctccaaaatctgcttcaagtgcattttcatcgtttgccctacaacataa |
29121227 |
T |
|
| Q |
218 |
acccaagttaaccattaaaaattgttggctaattagggaaaatggaagcatgacatgttgaaaactttaaagtaaaaaagtactataattgaaatggcat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| |
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| T |
29121228 |
acccaagttaaccattaaaaattgttggctaattagggaaaatggaagcatgacatgttgaaaactttaaaatgaaaaagtactataactgaaatggcat |
29121327 |
T |
|
| Q |
318 |
tgtaccatttttgatcgtatattctttccttgaatttgaggtaatcggtggatgttataggttcaactgaaagattctcagagctcacttttacatattc |
417 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29121328 |
tgtaccatttttggtcgtatattctttccttgaatttgaggtaatcggtggatgttataggttcaactgaaagattctcagagctcacttttacatattc |
29121427 |
T |
|
| Q |
418 |
ccaaactccagggtctggccttactgcaaaggcaacatatggtggatcaacaatagcttcctgcaagcattaaaatccatattaattaataagcctatga |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29121428 |
ccaaactccagggtctggccttactgcaaaggcaacatatggtggatcaacaatagcttcctgcaagcattaaaatccatattaattaataagcctatga |
29121527 |
T |
|
| Q |
518 |
aacaacgacatataaccctagacttcgataataatttaagagaatagatatgattaaatataactacacgtgtttatcacgtcagacaccaaatatatct |
617 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29121528 |
aacaacgacatataaccctatacttcgataataatttaagagaatagatatgattaaatataactacacgtgtttatcacgtcagacaccaaatatatct |
29121627 |
T |
|
| Q |
618 |
aaagcaatatggtcggtccaactaactatttttcttaatatcattttttcaaatttaaataaatttagacgacaaaatatgacaaaaaatagtgatagac |
717 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29121628 |
aaagcaatatggtctttccaactaactatttttcttaatatcattttttcaaatttaaataaatttagacgacaaaatatgacaaaaaatagtgatagac |
29121727 |
T |
|
| Q |
718 |
ggacatgctagtgtccgtctttccagtagtccatataaggttagtaaaatgtaaattaatttatag--cnnnnnnnnnntgcaaattggttgacaaaata |
815 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
29121728 |
ggacatactagtgtccgtctttccagttgtccatataaggttagtaaaatgtaaattaatttataggaaaaaaagaaaatgcaaattggttgacaaaata |
29121827 |
T |
|
| Q |
816 |
ttaacctgtgtaaaacttaataagaagccaagattgccttccaatatttgattcctatcattctggtcctttataacttgctccatttcttccatcaaat |
915 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29121828 |
ttaacctgtgtaaaacttaataagaaaccaagattgccttccaatatttgattcctatcattctggtcctttataacttgctccatttcttccatcaaat |
29121927 |
T |
|
| Q |
916 |
catgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatcgactctgcttcgatgcatctggtgatgacatatt |
1015 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
29121928 |
catgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatctactctgcttcgatgcatctggtgatgacatatt |
29122027 |
T |
|
| Q |
1016 |
gttatctgttattgaatctgtgcgcttcaaccctgatgcagaagccatgaattaaattgaagatattgtatatatttattgtttctacaaggagatatgt |
1115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
29122028 |
gttatctgttattgaatctgtgcgcttcaaccctgatgcagaagccatgaattaaattgaagatattgtatatatttgttgtttctacaaggagatatgt |
29122127 |
T |
|
| Q |
1116 |
ctcaatttatatccatggctatttatactttgtacattatgtatgaattgggacccatgcaaaggtgcaagagtgggagaaagaacatttgcaatggcca |
1215 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29122128 |
ctcaatttatatgcatggctatttatactttgtacattatgtatgaattgggacccatgcaaaggtgcaagagtgggagaaagaacatttgcaatggcca |
29122227 |
T |
|
| Q |
1216 |
atgagtatgagaatttctaagagggaactattggtatcattcttttcttctttgtttcattgtgatgat |
1284 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29122228 |
atgagtatgaaaatttctaagagggaactattggtatcattcttttcttctttgtttcattgtggtgat |
29122296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 7e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 7e-34
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 32774527 - 32774337
Alignment:
| Q |
21 |
tgatgatttagtgataacaagtagtccaatataggttgagtttttgccaatttgccactaaaacgtgaagttaagaactttgaaacaaaatggagtccat |
120 |
Q |
| |
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|||||||||||| |||||||||||||| ||||| || | ||| |||||||| ||| | | |||||||||||||||||||||||| || ||||||| |
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| T |
32774527 |
tgatgatttagttttaacaagtagtccactatagtctgtgctttggccaatttcccagttgtccttgaagttaagaactttgaaacaaagtgtagtccat |
32774428 |
T |
|
| Q |
121 |
ttccaattgaagaaggcaattttaagttaggaataggaaagtcaaatgctccaaaatctgcttcaagtgcattttcatcgtttgccctaca |
211 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||| || |||||||||||||| |||||||||| |||||||||||| ||||||||||| |
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|
| T |
32774427 |
ttccaattgaagaagacaaggttaatttaggaatcccaatatcaaatgctccaaagtctgcttcaaatgcattttcatcatttgccctaca |
32774337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 321 - 484
Target Start/End: Complemental strand, 32773980 - 32773817
Alignment:
| Q |
321 |
accatttttgatcgtatattctttccttgaatttgaggtaatcggtggatgttataggttcaactgaaagattctcagagctcacttttacatattccca |
420 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||||||||||| |||| || ||||| ||||| || || | |||||| | || ||| |||||||| |
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|
| T |
32773980 |
accatttttggtcatatactctttccttgaatttgaggtaatctgtgggggtgataggctcaacagagaggtcctcagaattgacacgtacgtattccca |
32773881 |
T |
|
| Q |
421 |
aactccagggtctggccttactgcaaaggcaacatatggtggatcaacaatagcttcctgcaag |
484 |
Q |
| |
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|||||| || | ||||| | ||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
32773880 |
aactcctggattaggcctaattgcaaaggctacatatggtggatcaacaacagcttcctgcaag |
32773817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 897 - 1000
Target Start/End: Complemental strand, 32773610 - 32773507
Alignment:
| Q |
897 |
tccatttcttccatcaaatcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatcgactctgcttcgatg |
996 |
Q |
| |
|
|||| ||||||||| || ||||||| ||| ||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||||| ||||| | || ||| |
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|
| T |
32773610 |
tccacttcttccattaattcatgaagtttcatgattcttctccctttttctaggtacttagcaaagcacttcttcatatggtatctactcttcctcaatg |
32773511 |
T |
|
| Q |
997 |
catc |
1000 |
Q |
| |
|
|||| |
|
|
| T |
32773510 |
catc |
32773507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 7e-34; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 7e-34
Query Start/End: Original strand, 819 - 1002
Target Start/End: Original strand, 6732356 - 6732541
Alignment:
| Q |
819 |
acctgtgtaaaacttaataa--gaagccaagattgccttccaatatttgattcctatcattctggtcctttataacttgctccatttcttccatcaaatc |
916 |
Q |
| |
|
|||| ||||||||||||||| |||||||| |||||||||||||||||||||| | | | ||| ||| |||| |||||||||||||||||||||||| || |
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|
| T |
6732356 |
acctatgtaaaacttaataaaagaagccaaaattgccttccaatatttgattcttgtgactcttgtcatttacaacttgctccatttcttccatcaagtc |
6732455 |
T |
|
| Q |
917 |
atgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatcgactctgcttcgatgcatctg |
1002 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||||| |||| ||||| ||||| || |||| ||||| |||||| |||||| |
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|
| T |
6732456 |
atgaaagtttatattcctttcacctttctcaaggtacttgtcaaagcacctattcatttgatatctgctctgtttcgatacatctg |
6732541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 320 - 468
Target Start/End: Original strand, 6732050 - 6732199
Alignment:
| Q |
320 |
taccatttttgatcgtatattctttccttgaatttgaggtaatcggtggatgttataggttcaactgaaagattctcagagctcacttttacatattccc |
419 |
Q |
| |
|
|||||||||| ||| ||||||||||| || ||||||| |||||||||||||||||||||||||| || ||| ||||||| ||||||| |||| | |||| |
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| T |
6732050 |
taccattttttatcatatattctttcttttaatttgacgtaatcggtggatgttataggttcaagtggaaggttctcagcgctcactcttac--actccc |
6732147 |
T |
|
| Q |
420 |
aaactccagggtctggc---cttactgcaaaggcaacatatggtggatcaac |
468 |
Q |
| |
|
||||| ||| ||| || |||||| |||||||||||| ||||||||||| |
|
|
| T |
6732148 |
aaacttcagtgtcctgctggcttacttgaaaggcaacatacggtggatcaac |
6732199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 411 - 466
Target Start/End: Original strand, 6654926 - 6654981
Alignment:
| Q |
411 |
catattcccaaactccagggtctggccttactgcaaaggcaacatatggtggatca |
466 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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|
| T |
6654926 |
catattcccaaactccaggatctggccttcctgcaaaggcaacatatggtggatca |
6654981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 900 - 978
Target Start/End: Complemental strand, 6528844 - 6528766
Alignment:
| Q |
900 |
atttcttccatcaaatcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggt |
978 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| | ||||||||| ||| |||| |||| ||||| ||| ||||| |||||| |
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|
| T |
6528844 |
atttcttccatcaagtcatgaagttttatggttcttctacctctctaaaggaactttgcaaagcacttcttcgtatggt |
6528766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 48; Significance: 8e-18; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 411 - 466
Target Start/End: Original strand, 10529 - 10584
Alignment:
| Q |
411 |
catattcccaaactccagggtctggccttactgcaaaggcaacatatggtggatca |
466 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10529 |
catattcccaaactccaggatctggccttcctgcaaaggcaacatatggtggatca |
10584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 543 - 590
Target Start/End: Complemental strand, 32931545 - 32931498
Alignment:
| Q |
543 |
cgataataatttaagagaatagatatgattaaatataactacacgtgt |
590 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||| |||| |
|
|
| T |
32931545 |
cgataataatttaagaaaatagaagtgattaaatataactacatgtgt |
32931498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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