View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19289_high_37 (Length: 343)

Name: NF19289_high_37
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19289_high_37
NF19289_high_37
[»] chr5 (7 HSPs)
chr5 (1-324)||(34231828-34232151)
chr5 (1-323)||(34239580-34239902)
chr5 (42-323)||(42129633-42129914)
chr5 (173-323)||(41571205-41571355)
chr5 (90-295)||(41712663-41712868)
chr5 (41-275)||(42124306-42124540)
chr5 (180-280)||(41432339-41432439)
[»] chr2 (1 HSPs)
chr2 (40-291)||(12249264-12249515)
[»] chr6 (1 HSPs)
chr6 (42-289)||(25522086-25522333)
[»] chr3 (1 HSPs)
chr3 (26-270)||(8523841-8524085)
[»] chr4 (1 HSPs)
chr4 (178-271)||(11118949-11119042)


Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 34231828 - 34232151
Alignment:
Q  1 ttttcaacagctagttcattttcgtttaaatgacaaccgtctaaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatttatatcta 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34231828 ttttcaacagctagttcgttttcgtttaaatgacaaccgtctaaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatttatatcta 34231927  T
Q  101 tcaaacaatcaaattacagggcatatcagtgcaatctcgtcgtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattccagaat 200  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34231928 tcaaacaatcaacttacagggcatatcagtgcaatctcgtcctattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattccagaat 34232027  T
Q  201 caattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttcaacactttggcaaacttcaaaatttgta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34232028 caattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttcaacactttggcaaacttcaaaatttgta 34232127  T
Q  301 ttctttgtccctttcacagaatac 324  Q
    ||||||||||||||||||||||||    
T  34232128 ttctttgtccctttcacagaatac 34232151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 34239580 - 34239902
Alignment:
Q  1 ttttcaacagctagttcattttcgtttaaatgacaaccgtctaaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatttatatcta 100  Q
    ||||||| ||||| || ||||  | ||||||||||||   ||||| ||||||||||||||||| |||||||||||||||  |||| ||  | | ||||||    
T  34239580 ttttcaaaagctaatttatttgaggttaaatgacaacttgctaaatggaacaattccttcctccttgttatctttgccttctttggtacttctgtatcta 34239679  T
Q  101 tcaaacaatcaaattacagggcatatcagtgcaatctcgtcgtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattccagaat 200  Q
    |||||||||| | ||||||||| |||||||| |||||| || ||||| ||||||  ||||  |||| ||   ||||||||||||||  |||||||| | |    
T  34239680 tcaaacaatcgacttacagggcctatcagtgaaatctcatcatattccttagagtatctatctctatgcaacaacaagctacaaggtgatattccaaatt 34239779  T
Q  201 caattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttcaacactttggcaaacttcaaaatttgta 300  Q
    ||||||||||||||| |||  ||  |  | ||  |||||||||||||||||||||||||||||||||||||||| |||||   ||||||||||| ||| |    
T  34239780 caattttcaaccttgcaaacctaattacactatgtctatcatcaaacaacttgagtggtgttgtcaattttcaagactttacaaaacttcaaaaattgga 34239879  T
Q  301 ttctttgtccctttcacagaata 323  Q
    |||| ||||||||||||| ||||    
T  34239880 ttctctgtccctttcacataata 34239902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 42 - 323
Target Start/End: Complemental strand, 42129914 - 42129633
Alignment:
Q  42 taaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatttatatctatcaaacaatcaaattacagggcatatcagtgcaatctcgtc 141  Q
    |||| ||||||||||||||||| ||||||||||||||   |||| |  |||||  ||||||||| ||||   ||||| ||||||||| ||||||||| ||    
T  42129914 taaatggaacaattccttcctccttgttatctttgccgtctttggttcatttagttctatcaaataatcgtcttacaaggcatatcactgcaatctcatc 42129815  T
Q  142 gtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatca 241  Q
     ||||| ||| ||   ||| ||||| |||| |||||||||||||||||||||||| |||| ||||||||||||| ||| ||| || |  |||||||||||    
T  42129814 atattccttaaagaagctagatctaagcggcaacaagctacaaggcaatattccaaaatctattttcaaccttgcaaacttaactttgctagatctatca 42129715  T
Q  242 tcaaacaacttgagtggtgttgtcaattttcaacactttggcaaacttcaaaatttgtattctttgtccctttcacagaata 323  Q
    |||||||||||||||| |||| |  ||||||||||||||  |||||||||| ||||| |  || |||| |||||||| ||||    
T  42129714 tcaaacaacttgagtgatgttattgattttcaacacttttccaaacttcaatatttgaaaactctgtcactttcacataata 42129633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 173 - 323
Target Start/End: Original strand, 41571205 - 41571355
Alignment:
Q  173 aacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttc 272  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||||||  || ||  | ||   || ||||||||||||||||||||| |||||||||||     
T  41571205 aacaagctacaaggcgatattcctgaatctattttcaaccttgtaaacctaactacactatgcctgtcatcaaacaacttgagtggtattgtcaatttta 41571304  T
Q  273 aacactttggcaaacttcaaaatttgtattctttgtccctttcacagaata 323  Q
    || |||||  |||||||||||||||| ||||| ||||||||||||| ||||    
T  41571305 aatacttttccaaacttcaaaatttgaattctctgtccctttcacataata 41571355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 90 - 295
Target Start/End: Original strand, 41712663 - 41712868
Alignment:
Q  90 atttatatctatcaaacaatcaaattacagggcatatcagtgcaatctcgtcgtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaa 189  Q
    ||||| |||||||||| || | | ||| ||||||||||| ||||||||| || ||||| |||||||  ||| |||||  ||| ||||| ||| |||||||    
T  41712663 atttagatctatcaaataaccgacttatagggcatatcattgcaatctcatcatattccttagaggagctatatctattcggcaacaaactagaaggcaa 41712762  T
Q  190 tattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttcaacactttggcaaactt 289  Q
    ||||||||||||||||||||| ||| ||||  || ||  | |||| ||||||||||||||||| |||||||||||  |||||||| ||||   | |||||    
T  41712763 tattccagaatcaattttcaaacttataaacctaactagactagacctatcatcaaacaacttcagtggtgttgttgattttcaatacttctccgaactt 41712862  T
Q  290 caaaat 295  Q
    ||||||    
T  41712863 caaaat 41712868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 41 - 275
Target Start/End: Complemental strand, 42124540 - 42124306
Alignment:
Q  41 ctaaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatttatatctatcaaacaatcaaattacagggcatatcagtgcaatctcgt 140  Q
    ||||| |||||| |||||||||| |||||||||||||||  ||||  || |||| |||||||| | |||| | |||||||||||||||||| ||| || |    
T  42124540 ctaaatggaacagttccttcctccttgttatctttgccttctttggcaattttagatctatcatataatcgacttacagggcatatcagtgaaatatcat 42124441  T
Q  141 cgtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatc 240  Q
    | ||||| ||| |    |||| |||| ||   |||| |||||||||||||||||| || || |||||||||||   |||  || ||   |||  ||||||    
T  42124440 catattctttaaacatgctaactctaagcaacaacaggctacaaggcaatattcctgagtccattttcaacctaacaaaactatctcacttaattctatc 42124341  T
Q  241 atcaaacaacttgagtggtgttgtcaattttcaac 275  Q
     || ||| ||||||||||| |||||||||||||||    
T  42124340 ttcgaacgacttgagtggtcttgtcaattttcaac 42124306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 280
Target Start/End: Complemental strand, 41432439 - 41432339
Alignment:
Q  180 tacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttcaacactt 279  Q
    ||||||| ||||||||||||||| ||||||||||||||||  |  ||   ||   |||||| ||||| |||||||||||| ||||||||||| ||| |||    
T  41432439 tacaaggaaatattccagaatcacttttcaaccttgtaaaccttactaacttgtgtctatcttcaaataacttgagtggttttgtcaattttaaactctt 41432340  T
Q  280 t 280  Q
    |    
T  41432339 t 41432339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 40 - 291
Target Start/End: Complemental strand, 12249515 - 12249264
Alignment:
Q  40 tctaaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatttatatctatcaaacaatcaaattacagggcatatcagtgcaatctcg 139  Q
    ||||||||||||||||||| || | |||||||||||||||  ||||  | || || | || |||||||||| | ||||||| |||||||||||||||||     
T  12249515 tctaaacggaacaattcctcccaccttgttatctttgccttctttggaacatctagagctgtcaaacaatcgatttacaggacatatcagtgcaatctca 12249416  T
Q  140 tcgtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctat 239  Q
    ||||||||||||||  | ||| |||||   ||||||||||||||||||||||||||| |||| ||||||||||||  ||   || ||  | ||||| |||    
T  12249415 tcgtattcgttagatacgctatatctatctggtaacaagctacaaggcaatattccaaaatccattttcaaccttacaaccctaactagactagatttat 12249316  T
Q  240 catcaaacaacttgagtggtgttgtcaattttcaacactttggcaaacttca 291  Q
    |||||||||||||||||||||||||  ||||||||| ||||  |||||||||    
T  12249315 catcaaacaacttgagtggtgttgttgattttcaactcttttccaaacttca 12249264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 42 - 289
Target Start/End: Original strand, 25522086 - 25522333
Alignment:
Q  42 taaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatttatatctatcaaacaatcaaattacagggcatatcagtgcaatctcgtc 141  Q
    |||| |||||||||||||||||||||||||||||||||  |||| || ||||||||||||| ||||||| | |||||||   ||||||||||| ||| ||    
T  25522086 taaatggaacaattccttcctctttgttatctttgccttctttggtatatttatatctatctaacaatcgacttacaggatctatcagtgcaacctcatc 25522185  T
Q  142 gtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatca 241  Q
     ||||| ||||||  | ||||||||  |   ||||||||||||||||||||||||||||| |||||||| |||  |||  || ||    ||  ||||||     
T  25522186 atattccttagagagtttaaatctatacaacaacaagctacaaggcaatattccagaatccattttcaatcttacaaacctaactaatctaattctatct 25522285  T
Q  242 tcaaacaacttgagtggtgttgtcaattttcaacactttggcaaactt 289  Q
    | |||| ||||||||||| ||||||||||||||||||||  |||||||    
T  25522286 ttaaacgacttgagtggttttgtcaattttcaacacttttccaaactt 25522333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 270
Target Start/End: Complemental strand, 8524085 - 8523841
Alignment:
Q  26 ttaaatgacaaccgtctaaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatttatatctatcaaacaatcaaattacagggcata 125  Q
    ||||||||||||   ||||| || ||||||||| |||| |||||||| |||||   |||||||   ||| || ||||||| |||||| |||||||| |||    
T  8524085 ttaaatgacaacttgctaaatggtacaattcctccctccttgttatccttgccatttttgctagtattagatttatcaaataatcaacttacagggaata 8523986  T
Q  126 tcagtgcaatctcgtcgtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagc 225  Q
    |||| |||||||| || ||||| ||||||  ||||  |||| |    |||| |||||||||||||||||||||||| ||||||||||||| |||  ||      
T  8523985 tcagcgcaatctcatcatattccttagagtttctatctctaagtaacaacaggctacaaggcaatattccagaatccattttcaaccttgcaaacctaag 8523886  T
Q  226 tgtattagatctatcatcaaacaacttgagtggtgttgtcaattt 270  Q
    |  | ||||||||||||||||||||||||||||||||||||||||    
T  8523885 tagactagatctatcatcaaacaacttgagtggtgttgtcaattt 8523841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 11119042 - 11118949
Alignment:
Q  178 gctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaatttt 271  Q
    |||||||||||||||||||||||  ||||||| |||   |||  ||| || | |||||||||||||||||||||||||||||||||||||||||    
T  11119042 gctacaaggcaatattccagaatgcattttcagcctaacaaagctagatgaactagatctatcatcaaacaacttgagtggtgttgtcaatttt 11118949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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