View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_high_38 (Length: 341)
Name: NF19289_high_38
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 31856391 - 31856697
Alignment:
| Q |
20 |
aacattagcagtaattaacaagcaagcacaatccatactagtactcatcatagaccgtaatgaatcacaacaactacttgatggtgttattaaaccatta |
119 |
Q |
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| T |
31856391 |
aacattagcagtaattaacaagcaagcacaatccatactagtactcatcatagactgtaatgaatcacaacaactacttgatggtgttattaaaccatta |
31856490 |
T |
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| Q |
120 |
taattggtgcttcctgtaatgaaatttgcacatggggtgaaactactaatcatagaagttgtgcaaggtgtactaatctgtccaaaaaccaattttactg |
219 |
Q |
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| T |
31856491 |
taattggtgcttcctgtaatgaaatttgcacatggggtgaaactactaatcatagaagttgtgcaaggtgtactaatctgtccaaaaaccaattttactg |
31856590 |
T |
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| Q |
220 |
aagtgattaaaagaaatgttgatatcactttcatttgaaaaatacttagatgtcccattgttgggtctgcaagaatgatgtgtcactcttaggattgtga |
319 |
Q |
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| T |
31856591 |
aagtgattaaaagaaatgttgatatcactttcatttgaaaaatacttagatgtcccattgttgggtctgcaagaatgatgtgtcactcttaggattgtga |
31856690 |
T |
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| Q |
320 |
tgggttt |
326 |
Q |
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| T |
31856691 |
tgggttt |
31856697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 31865591 - 31865670
Alignment:
| Q |
177 |
gttgtgcaaggtgtactaatctgtccaaaaaccaattttactgaagtgattaaaagaaatgttgatatcactttcatttg |
256 |
Q |
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| T |
31865591 |
gttgtgcaacgtgtactaatctgtacaaaaaccaattttaatgaagtgattaaatgaaatattgatatcactttcatttg |
31865670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 38117940 - 38117877
Alignment:
| Q |
41 |
gcaagcacaatccatactagtactcatcatagaccgtaatgaatcacaacaactacttgatggt |
104 |
Q |
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| T |
38117940 |
gcaagcacaatccatatttgtgctcatcaaagaccttaatgaatcacaacaagtagttgatggt |
38117877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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