View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_high_4 (Length: 871)
Name: NF19289_high_4
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 754; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 19 - 859
Target Start/End: Original strand, 29121454 - 29122296
Alignment:
| Q |
19 |
caaaggcaacatatggtggatcaacaatagcttcctgcaagcattaaaatccatattaattaataagcctatgaaacaacgacatataaccctagacttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29121454 |
caaaggcaacatatggtggatcaacaatagcttcctgcaagcattaaaatccatattaattaataagcctatgaaacaacgacatataaccctatacttc |
29121553 |
T |
|
| Q |
119 |
gataataatttaagagaatagatatgattaaatataactacacgtgtttatcacgtcagacaccaaatatatctaaagcaatatggtcggtccaactaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29121554 |
gataataatttaagagaatagatatgattaaatataactacacgtgtttatcacgtcagacaccaaatatatctaaagcaatatggtctttccaactaac |
29121653 |
T |
|
| Q |
219 |
tatttttcttaatatcattttttcaaatttaaataaatttagacgacaaaatatgacaaaaaatagtgatagacggacatgctagtgtccgtctttccag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29121654 |
tatttttcttaatatcattttttcaaatttaaataaatttagacgacaaaatatgacaaaaaatagtgatagacggacatactagtgtccgtctttccag |
29121753 |
T |
|
| Q |
319 |
tagtccatataaggttagtaaaatgtaaattaatttatagcnnnnnnnnnn--tgcaaattggttgacaaaatattaacctgtgtaaaacttaataagaa |
416 |
Q |
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| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29121754 |
ttgtccatataaggttagtaaaatgtaaattaatttataggaaaaaaagaaaatgcaaattggttgacaaaatattaacctgtgtaaaacttaataagaa |
29121853 |
T |
|
| Q |
417 |
gccaagattgccttccaatatttgattcctatcattctggtcctttataacttgctccatttcttccatcaaatcatgaacttttatgatccttctacct |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29121854 |
accaagattgccttccaatatttgattcctatcattctggtcctttataacttgctccatttcttccatcaaatcatgaacttttatgatccttctacct |
29121953 |
T |
|
| Q |
517 |
ttctcaaggtacttggcaaaacacctcttcatatggtatcgactctgcttcgatgcatctggtgatgacatattgttatctgttattgaatctgtgcgct |
616 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29121954 |
ttctcaaggtacttggcaaaacacctcttcatatggtatctactctgcttcgatgcatctggtgatgacatattgttatctgttattgaatctgtgcgct |
29122053 |
T |
|
| Q |
617 |
tcaaccctgatgcagaagccatgaattaaattgaagatattgtatatatttattgtttctacaaggagatatgtctcaatttatatccatggctatttat |
716 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29122054 |
tcaaccctgatgcagaagccatgaattaaattgaagatattgtatatatttgttgtttctacaaggagatatgtctcaatttatatgcatggctatttat |
29122153 |
T |
|
| Q |
717 |
actttgtacattatgtatgaattgggacccatgcaaaggtgcaagagtgggagaaagaacatttgcaatggccaatgagtatgagaatttctaagaggga |
816 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29122154 |
actttgtacattatgtatgaattgggacccatgcaaaggtgcaagagtgggagaaagaacatttgcaatggccaatgagtatgaaaatttctaagaggga |
29122253 |
T |
|
| Q |
817 |
actattggtatcattcttttcttctttgtttcattgtgatgat |
859 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29122254 |
actattggtatcattcttttcttctttgtttcattgtggtgat |
29122296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 394 - 577
Target Start/End: Original strand, 6732356 - 6732541
Alignment:
| Q |
394 |
acctgtgtaaaacttaataa--gaagccaagattgccttccaatatttgattcctatcattctggtcctttataacttgctccatttcttccatcaaatc |
491 |
Q |
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|||| ||||||||||||||| |||||||| |||||||||||||||||||||| | | | ||| ||| |||| |||||||||||||||||||||||| || |
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| T |
6732356 |
acctatgtaaaacttaataaaagaagccaaaattgccttccaatatttgattcttgtgactcttgtcatttacaacttgctccatttcttccatcaagtc |
6732455 |
T |
|
| Q |
492 |
atgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatcgactctgcttcgatgcatctg |
577 |
Q |
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||||| ||||| ||||| ||||||||||||||||||| |||| ||||| ||||| || |||| ||||| |||||| |||||| |
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| T |
6732456 |
atgaaagtttatattcctttcacctttctcaaggtacttgtcaaagcacctattcatttgatatctgctctgtttcgatacatctg |
6732541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 475 - 553
Target Start/End: Complemental strand, 6528844 - 6528766
Alignment:
| Q |
475 |
atttcttccatcaaatcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggt |
553 |
Q |
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|||||||||||||| ||||||| ||||||| | ||||||||| ||| |||| |||| ||||| ||| ||||| |||||| |
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| T |
6528844 |
atttcttccatcaagtcatgaagttttatggttcttctacctctctaaaggaactttgcaaagcacttcttcgtatggt |
6528766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 472 - 575
Target Start/End: Complemental strand, 32773610 - 32773507
Alignment:
| Q |
472 |
tccatttcttccatcaaatcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatcgactctgcttcgatg |
571 |
Q |
| |
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|||| ||||||||| || ||||||| ||| ||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||||| ||||| | || ||| |
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| T |
32773610 |
tccacttcttccattaattcatgaagtttcatgattcttctccctttttctaggtacttagcaaagcacttcttcatatggtatctactcttcctcaatg |
32773511 |
T |
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| Q |
572 |
catc |
575 |
Q |
| |
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|||| |
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| T |
32773510 |
catc |
32773507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 32773857 - 32773817
Alignment:
| Q |
19 |
caaaggcaacatatggtggatcaacaatagcttcctgcaag |
59 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
32773857 |
caaaggctacatatggtggatcaacaacagcttcctgcaag |
32773817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 32931545 - 32931498
Alignment:
| Q |
118 |
cgataataatttaagagaatagatatgattaaatataactacacgtgt |
165 |
Q |
| |
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|||||||||||||||| |||||| |||||||||||||||||| |||| |
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| T |
32931545 |
cgataataatttaagaaaatagaagtgattaaatataactacatgtgt |
32931498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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