View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_high_45 (Length: 302)
Name: NF19289_high_45
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_high_45 |
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| [»] scaffold1462 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold1880 (1 HSPs) |
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Alignment Details
Target: scaffold1462 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold1462
Description:
Target: scaffold1462; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 302
Target Start/End: Complemental strand, 1523 - 1233
Alignment:
| Q |
5 |
tcgatatttaaattgataagcgacaaacttgatataaggatctttgcatgattctttgcagcacaacgacaacgacggaggatcaaactattcaaatttt |
104 |
Q |
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| T |
1523 |
tcgatatttaaattgataagcgacaaacttgatataaggatatttgcatgattctttgtagcacaaccact------gaggatcaaattcttcaaatttt |
1430 |
T |
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| Q |
105 |
ggaagaccgaaaaaaggctcaacataaccgacattttcactatctctaaacatcaaatttgttagttccaaattaaccaatgctggaaatttcagatagt |
204 |
Q |
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| T |
1429 |
ggaagaccgaaaaa-ggctcaacatcaccgacattttcactatctctaaacatcaaattagttagttccaaattaaccaatgctggaaatttcagatagt |
1331 |
T |
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| Q |
205 |
caggaaaaaatgctttttgataaaccctagggtgtattttaacatgaagcttaagtgacgttagtgtctgaaacgaagacatagatgacaggattgac |
302 |
Q |
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| T |
1330 |
caggaaaaaatgctttttgataaaccctagggtgtattttaacatgaagcttaagtgacgttagtgtctgaaacgaagacatagatgacaggattgac |
1233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 5 - 302
Target Start/End: Complemental strand, 18316412 - 18316122
Alignment:
| Q |
5 |
tcgatatttaaattgataagcgacaaacttgatataaggatctttgcatgattctttgcagcacaacgacaacgacggaggatcaaactattcaaatttt |
104 |
Q |
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| T |
18316412 |
tcgatagttaaattgataagcgtcaaacttgatataaggatctttgcattattctttgtagcacaaccac------ggaggatcaaactattcaactttt |
18316319 |
T |
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| Q |
105 |
ggaagaccgaaaaaaggctcaacataaccgacattttcactatctctaaacatcaaatttgttagttccaaattaaccaatgctggaaatttcagatagt |
204 |
Q |
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| T |
18316318 |
tgaagaccgaaaaa-ggctcaacataaccgacattttccctatctctaaacatcaaattagttagttccaaattaaccaatgaaggaaatttcagatagt |
18316220 |
T |
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| Q |
205 |
caggaaaaaatgctttttgataaaccctagggtgtattttaacatgaagcttaagtgacgttagtgtctgaaacgaagacatagatgacaggattgac |
302 |
Q |
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| T |
18316219 |
caggaaaaaatgctttgagagaatcccaagggcgtatattaacagcaagcttaagtgacgttagtgtttgaaacgaaggcattgaagacaggattgac |
18316122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1880 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold1880
Description:
Target: scaffold1880; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 73 - 302
Target Start/End: Original strand, 299 - 527
Alignment:
| Q |
73 |
acaacgacggaggatcaaactattcaaattttggaagaccgaaaaaaggctcaacataaccgacattttcactatctctaaacatcaaatttgttagttc |
172 |
Q |
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||||| ||||||||||||||||||||| || | |||| |||||| |||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
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| T |
299 |
acaaccacggaggatcaaactattcaacttattaaagaacgaaaa-aggctcaacataaccgacattttcactatctctaaagatgaaattagttagttc |
397 |
T |
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| Q |
173 |
caaattaaccaatgctggaaatttcagatagtcaggaaaaaatgctttttgataaaccctagggtgtattttaacatgaagcttaagtgacgttagtgtc |
272 |
Q |
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| T |
398 |
caaattaaccaatgtcggaaatttcagatagtctggaaagaatgctttgtgataaatccaagggtttgtataaacggcaagcttaagtgttgttagtgtc |
497 |
T |
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| Q |
273 |
tgaaacgaagacatagatgacaggattgac |
302 |
Q |
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| T |
498 |
tgaaacgtagatatagaagacaggattgac |
527 |
T |
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