View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19289_high_48 (Length: 290)

Name: NF19289_high_48
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19289_high_48
NF19289_high_48
[»] chr4 (25 HSPs)
chr4 (18-290)||(36385984-36386258)
chr4 (66-144)||(36385817-36385895)
chr4 (76-135)||(36381098-36381157)
chr4 (249-290)||(20743284-20743325)
chr4 (237-290)||(21945515-21945568)
chr4 (67-135)||(5469964-5470032)
chr4 (258-290)||(32910563-32910595)
chr4 (67-135)||(39311372-39311440)
chr4 (243-290)||(18576037-18576084)
chr4 (251-290)||(24343519-24343558)
chr4 (251-290)||(31243556-31243595)
chr4 (66-137)||(52238309-52238380)
chr4 (91-129)||(52237641-52237679)
chr4 (239-288)||(13307891-13307940)
chr4 (90-135)||(32159545-32159590)
chr4 (245-290)||(36635336-36635381)
chr4 (239-288)||(44362680-44362729)
chr4 (258-290)||(903934-903966)
chr4 (258-290)||(8423733-8423765)
chr4 (238-290)||(9996852-9996904)
chr4 (258-290)||(16189721-16189753)
chr4 (238-290)||(18783989-18784041)
chr4 (258-290)||(22440615-22440647)
chr4 (258-290)||(26276024-26276056)
chr4 (67-135)||(39310396-39310464)
[»] chr7 (22 HSPs)
chr7 (66-137)||(5960992-5961063)
chr7 (66-135)||(5956439-5956508)
chr7 (66-135)||(43844794-43844863)
chr7 (66-134)||(4126694-4126762)
chr7 (70-135)||(43845891-43845956)
chr7 (237-288)||(5835261-5835312)
chr7 (251-290)||(18233606-18233645)
chr7 (244-290)||(17307905-17307951)
chr7 (249-290)||(23930231-23930272)
chr7 (249-290)||(30813824-30813865)
chr7 (67-112)||(39020956-39021001)
chr7 (239-290)||(21880164-21880215)
chr7 (239-290)||(25481914-25481965)
chr7 (18-53)||(43844891-43844926)
chr7 (260-290)||(7133295-7133325)
chr7 (244-290)||(27945053-27945099)
chr7 (244-289)||(22602711-22602756)
chr7 (258-290)||(2424626-2424658)
chr7 (258-290)||(12278847-12278879)
chr7 (258-290)||(29787384-29787416)
chr7 (258-290)||(43250005-43250037)
chr7 (66-130)||(45431064-45431128)
[»] chr6 (17 HSPs)
chr6 (66-136)||(6829988-6830058)
chr6 (66-135)||(6826558-6826627)
chr6 (66-137)||(34260114-34260185)
chr6 (66-135)||(34262185-34262254)
chr6 (247-290)||(7569172-7569215)
chr6 (239-289)||(4420175-4420225)
chr6 (239-290)||(7265589-7265640)
chr6 (239-290)||(13360368-13360419)
chr6 (239-290)||(28715307-28715358)
chr6 (251-290)||(34446577-34446616)
chr6 (244-290)||(9025495-9025541)
chr6 (244-290)||(9195755-9195801)
chr6 (244-290)||(32511667-32511713)
chr6 (258-290)||(11591885-11591917)
chr6 (258-290)||(19040364-19040396)
chr6 (258-290)||(26562701-26562733)
chr6 (258-290)||(31579240-31579272)
[»] chr1 (29 HSPs)
chr1 (66-135)||(2367542-2367611)
chr1 (239-290)||(36878473-36878524)
chr1 (67-135)||(1764516-1764584)
chr1 (66-130)||(49399551-49399615)
chr1 (18-53)||(2367479-2367514)
chr1 (239-290)||(23636045-23636096)
chr1 (243-290)||(27471566-27471613)
chr1 (67-138)||(27890565-27890636)
chr1 (239-290)||(28674812-28674863)
chr1 (239-290)||(40258929-40258980)
chr1 (251-290)||(40747781-40747820)
chr1 (244-290)||(5376501-5376547)
chr1 (244-290)||(6427362-6427408)
chr1 (67-137)||(7338799-7338869)
chr1 (244-290)||(44482242-44482288)
chr1 (245-290)||(1864882-1864927)
chr1 (245-290)||(10572591-10572636)
chr1 (245-290)||(23738690-23738735)
chr1 (249-290)||(42004953-42004994)
chr1 (261-290)||(42325572-42325601)
chr1 (91-136)||(49400311-49400356)
chr1 (258-290)||(7918226-7918258)
chr1 (258-290)||(19324574-19324606)
chr1 (258-290)||(25098570-25098602)
chr1 (258-290)||(25361898-25361930)
chr1 (258-290)||(31015055-31015087)
chr1 (258-290)||(34298448-34298480)
chr1 (258-290)||(40181883-40181915)
chr1 (67-135)||(49385085-49385153)
[»] scaffold0402 (1 HSPs)
scaffold0402 (66-135)||(10856-10925)
[»] chr8 (23 HSPs)
chr8 (91-136)||(17938174-17938219)
chr8 (66-135)||(17943013-17943081)
chr8 (67-137)||(42578707-42578777)
chr8 (67-136)||(6462616-6462685)
chr8 (251-290)||(3025563-3025602)
chr8 (73-131)||(8814483-8814541)
chr8 (240-290)||(20679392-20679442)
chr8 (68-130)||(42503031-42503093)
chr8 (245-290)||(11803271-11803316)
chr8 (74-135)||(12203350-12203411)
chr8 (74-135)||(12447778-12447839)
chr8 (67-136)||(38443033-38443102)
chr8 (91-136)||(38443623-38443668)
chr8 (245-290)||(40332203-40332248)
chr8 (258-290)||(4611546-4611578)
chr8 (67-135)||(6461880-6461948)
chr8 (258-290)||(7658475-7658507)
chr8 (258-290)||(13203653-13203685)
chr8 (258-290)||(14134711-14134743)
chr8 (258-290)||(34201061-34201093)
chr8 (258-290)||(34897097-34897129)
chr8 (68-136)||(38443694-38443762)
chr8 (258-290)||(44067528-44067560)
[»] chr3 (19 HSPs)
chr3 (67-136)||(23514486-23514555)
chr3 (239-290)||(20691331-20691382)
chr3 (67-129)||(35903695-35903757)
chr3 (67-135)||(8922884-8922952)
chr3 (71-131)||(40810290-40810350)
chr3 (67-135)||(41325822-41325890)
chr3 (255-290)||(21149079-21149114)
chr3 (244-290)||(16192751-16192797)
chr3 (91-137)||(23513686-23513732)
chr3 (244-290)||(25948888-25948934)
chr3 (261-290)||(16789668-16789697)
chr3 (245-290)||(20503477-20503522)
chr3 (249-290)||(25652037-25652078)
chr3 (67-126)||(1772876-1772935)
chr3 (246-290)||(4987294-4987338)
chr3 (67-135)||(8923627-8923695)
chr3 (258-290)||(11251990-11252022)
chr3 (258-290)||(24205056-24205088)
chr3 (67-111)||(50107592-50107636)
[»] chr2 (13 HSPs)
chr2 (67-135)||(34228147-34228215)
chr2 (67-129)||(35029862-35029924)
chr2 (67-135)||(34229075-34229143)
chr2 (260-290)||(10535776-10535806)
chr2 (244-290)||(12668424-12668470)
chr2 (249-290)||(12748696-12748737)
chr2 (67-112)||(29762260-29762305)
chr2 (249-290)||(30563421-30563462)
chr2 (245-290)||(34006993-34007038)
chr2 (239-288)||(37491851-37491900)
chr2 (258-290)||(21616774-21616806)
chr2 (258-290)||(21782833-21782865)
chr2 (258-290)||(23921265-23921297)
[»] chr5 (17 HSPs)
chr5 (239-290)||(28588670-28588721)
chr5 (68-130)||(2639717-2639779)
chr5 (70-135)||(120073-120138)
chr5 (251-290)||(41558662-41558701)
chr5 (244-290)||(6471890-6471936)
chr5 (251-289)||(23015997-23016035)
chr5 (260-290)||(31264450-31264480)
chr5 (245-290)||(21194125-21194170)
chr5 (237-290)||(24906295-24906348)
chr5 (251-288)||(26205768-26205805)
chr5 (245-290)||(38749565-38749610)
chr5 (258-290)||(6326312-6326344)
chr5 (258-290)||(24273045-24273077)
chr5 (258-290)||(24389137-24389169)
chr5 (258-290)||(25863216-25863248)
chr5 (258-290)||(27932247-27932279)
chr5 (246-290)||(43001812-43001856)
[»] scaffold0049 (1 HSPs)
scaffold0049 (239-290)||(63785-63836)
[»] scaffold0598 (1 HSPs)
scaffold0598 (261-290)||(8071-8100)
[»] scaffold0291 (1 HSPs)
scaffold0291 (67-135)||(19375-19444)
[»] scaffold0123 (1 HSPs)
scaffold0123 (258-290)||(44540-44572)
[»] scaffold0044 (1 HSPs)
scaffold0044 (258-290)||(53192-53224)
[»] scaffold0004 (1 HSPs)
scaffold0004 (258-290)||(92819-92851)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 36385984 - 36386258
Alignment:
Q  18 tttttctcatttaagaattgctttctccaagccattgannnnnnnnnn--acacatgtcacacatccattactagaaatggggtaaattgagcaaagtga 115  Q
    |||||||||||||||||||||||| |||||||||||||            ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36385984 tttttctcatttaagaattgctttttccaagccattgattttttttttttacacatgtcacacatccatgactagaaatggggtaaattgagcaaagtga 36386083  T
Q  116 aatggagcaaagatgcactcatcgttatgtagtttacaagaagacaagaactatatttgatgacctttcaaaaggaagtttaccatttcttataagtcac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36386084 aatggagcaaagatgcactcatcgttatgtagtttacaagaagacaagaactatatttgatgacctttcgaaaggaagtttaccatttcttataagtcac 36386183  T
Q  216 gacggttattgctaactgtcgcatgtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  36386184 gacggttattgctaactgtcgcatgtccgacaccaacacctttaattacactgaattatgtccttttctcaaatt 36386258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 36385817 - 36385895
Alignment:
Q  66 acacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactcatcgttatg 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36385817 acacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactcatcgttatg 36385895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 36381157 - 36381098
Alignment:
Q  76 cacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    ||||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||||||    
T  36381157 cacatccattattagatatggggtaaattaagcaaagtgaaatggagtaaagatgcactc 36381098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 20743284 - 20743325
Alignment:
Q  249 caacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  20743284 caacacctatgattacactgaattatgtcattttctcaaatt 20743325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 21945568 - 21945515
Alignment:
Q  237 catgtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||| |||||| |||| | ||||||||||||||||||||||||| |||||||    
T  21945568 catgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaatt 21945515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 5469964 - 5470032
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    |||||||||||||||||| |    ||||||| ||||||||||||| | |||||||||||||||| ||||    
T  5469964 cacatgtcacacatccataatggtaaatgggataaattgagcaaacttaaatggagcaaagatggactc 5470032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 32910595 - 32910563
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    |||||||||||||||||||||||||||||||||    
T  32910595 taattacactgaattatgtcattttctcaaatt 32910563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 39311372 - 39311440
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    ||||||||||||||| || |||  ||||||||||||||||| ||  | |||||||||||||||| ||||    
T  39311372 cacatgtcacacatctatgacttaaaatggggtaaattgagaaatcttaaatggagcaaagatggactc 39311440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 18576037 - 18576084
Alignment:
Q  243 tgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||||||||| | ||||||||| ||||||||| |||||||||||||    
T  18576037 tgacaccaacacatataattacaccgaattatgtgattttctcaaatt 18576084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 251 - 290
Target Start/End: Complemental strand, 24343558 - 24343519
Alignment:
Q  251 acacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||| ||||||||||||||||||| |||||||||||||    
T  24343558 acacctataattacactgaattatgtaattttctcaaatt 24343519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 31243556 - 31243595
Alignment:
Q  251 acacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  31243556 acacctatgattacactgaattatgtcattttctcaaatt 31243595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 52238309 - 52238380
Alignment:
Q  66 acacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactcat 137  Q
    |||| |||||||||||||| |    ||||||||||||||||||||||  ||||| |||||||||| ||||||    
T  52238309 acacgtgtcacacatccatgaaggtaaatggggtaaattgagcaaaggcaaatgaagcaaagatggactcat 52238380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 52237679 - 52237641
Alignment:
Q  91 aaatggggtaaattgagcaaagtgaaatggagcaaagat 129  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  52237679 aaatggggtaaattgagcaaaggcaaatggagcaaagat 52237641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 13307940 - 13307891
Alignment:
Q  239 tgtctgacaccaacacctttaattacactgaattatgtcattttctcaaa 288  Q
    |||| ||||||||||| | | |||||| ||||||||||||||||||||||    
T  13307940 tgtccgacaccaacacttgtgattacattgaattatgtcattttctcaaa 13307891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 32159545 - 32159590
Alignment:
Q  90 gaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    |||||||||||||||||| |||   |||||||||||||||||||||    
T  32159545 gaaatggggtaaattgaggaaacctaaatggagcaaagatgcactc 32159590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 36635381 - 36635336
Alignment:
Q  245 acaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||| ||||| | ||||||||||||||||||| |||||||||||||    
T  36635381 acacgaacacatataattacactgaattatgtgattttctcaaatt 36635336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 44362729 - 44362680
Alignment:
Q  239 tgtctgacaccaacacctttaattacactgaattatgtcattttctcaaa 288  Q
    |||||||||||||||| | | |||||| | ||||||||||||||||||||    
T  44362729 tgtctgacaccaacacttgtgattacattaaattatgtcattttctcaaa 44362680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 903966 - 903934
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  903966 taattacactgaattatgtgattttctcaaatt 903934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 8423733 - 8423765
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  8423733 taattacactgaattatgtgattttctcaaatt 8423765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 9996904 - 9996852
Alignment:
Q  238 atgtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||||||||| | || | |||||| |||||||||||| |||||||||||||    
T  9996904 atgtctgacaccgagacatataattatactgaattatgtgattttctcaaatt 9996852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 16189753 - 16189721
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  16189753 taattacactgaattatgtgattttctcaaatt 16189721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 18784041 - 18783989
Alignment:
Q  238 atgtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||| | |||||||| | |||||  |||||||||||||||    
T  18784041 atgtctgacaccaacacgtgtaattacattcaattacttcattttctcaaatt 18783989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 22440615 - 22440647
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  22440615 taattacactgaattatgtgattttctcaaatt 22440647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 26276024 - 26276056
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    |||||||| ||||||||||||||||||||||||    
T  26276024 taattacattgaattatgtcattttctcaaatt 26276056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 39310464 - 39310396
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    ||||||||| ||||| || ||| |||||||| ||||||||| ||  | |||||||||||||||| ||||    
T  39310464 cacatgtcatacatctataacttgaaatgggataaattgaggaatcttaaatggagcaaagatggactc 39310396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 5960992 - 5961063
Alignment:
Q  66 acacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactcat 137  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5960992 acacatgtcacacatccattactagaaatggggtaaattgaggaaagtgaaatggagcaaagatgcactcat 5961063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 5956508 - 5956439
Alignment:
Q  66 acacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5956508 acacatgtcacacatccattactagaaatggggtaaattgaggaaagtgaaatggagcaaagatgcactc 5956439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 43844863 - 43844794
Alignment:
Q  66 acacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    |||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  43844863 acacatgtcacacatccatgtctttaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 43844794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 4126762 - 4126694
Alignment:
Q  66 acacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcact 134  Q
    ||||||||||| |||||||  ||  ||||||||||||||||||||||||||||||||||||||||||||    
T  4126762 acacatgtcacgcatccatgtcttcaaatggggtaaattgagcaaagtgaaatggagcaaagatgcact 4126694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 43845891 - 43845956
Alignment:
Q  70 atgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    ||||| |||||||||  ||  |||||||||||||||||||||||||||||||||||||| ||||||    
T  43845891 atgtcgcacatccatgtcttcaaatggggtaaattgagcaaagtgaaatggagcaaagaagcactc 43845956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 288
Target Start/End: Complemental strand, 5835312 - 5835261
Alignment:
Q  237 catgtctgacaccaacacctttaattacactgaattatgtcattttctcaaa 288  Q
    ||||||||||||| |||| | ||||||||||||||||||| |||||||||||    
T  5835312 catgtctgacaccgacacatataattacactgaattatgttattttctcaaa 5835261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 18233606 - 18233645
Alignment:
Q  251 acacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  18233606 acacctataattacactgaattatgtcattttctcaaatt 18233645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 17307951 - 17307905
Alignment:
Q  244 gacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||| | ||||||||||||||||||| |||||||||||||    
T  17307951 gacaccaacacatataattacactgaattatgttattttctcaaatt 17307905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 23930272 - 23930231
Alignment:
Q  249 caacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  23930272 caacacctatgattacactgaattatgtcattttctcaaatt 23930231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 30813865 - 30813824
Alignment:
Q  249 caacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  30813865 caacacctgtaattacactgaattatgtaattttctcaaatt 30813824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 39021001 - 39020956
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaag 112  Q
    ||||||||||||||||||  || |||||||||||||||||||||||    
T  39021001 cacatgtcacacatccatgtcttgaaatggggtaaattgagcaaag 39020956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 21880215 - 21880164
Alignment:
Q  239 tgtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||| |||||| |||| | ||||||||||||||||||| |||||||||||||    
T  21880215 tgtccgacaccgacacttgtaattacactgaattatgtaattttctcaaatt 21880164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 25481965 - 25481914
Alignment:
Q  239 tgtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||| ||||||||||| | ||||||||||||||||||| ||||| |||||||    
T  25481965 tgtccgacaccaacacttgtaattacactgaattatgtgattttttcaaatt 25481914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 43844926 - 43844891
Alignment:
Q  18 tttttctcatttaagaattgctttctccaagccatt 53  Q
    |||||||||||||||||||||||| |||||||||||    
T  43844926 tttttctcatttaagaattgctttttccaagccatt 43844891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 290
Target Start/End: Original strand, 7133295 - 7133325
Alignment:
Q  260 attacactgaattatgtcattttctcaaatt 290  Q
    |||||||||||||||||||||||||||||||    
T  7133295 attacactgaattatgtcattttctcaaatt 7133325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 27945099 - 27945053
Alignment:
Q  244 gacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||| |||| | ||||||||||||||||||| |||||||||||||    
T  27945099 gacaccgacacttgtaattacactgaattatgtaattttctcaaatt 27945053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 22602711 - 22602756
Alignment:
Q  244 gacaccaacacctttaattacactgaattatgtcattttctcaaat 289  Q
    |||||| |||| | ||||||||||||||||||| ||||||||||||    
T  22602711 gacaccgacacatataattacactgaattatgtgattttctcaaat 22602756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 2424658 - 2424626
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  2424658 taattacactgaattatgtgattttctcaaatt 2424626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 12278879 - 12278847
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||||||||||| |||||    
T  12278879 taattacactgaattatgtcattttcttaaatt 12278847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 29787384 - 29787416
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  29787384 taattacactgaattatgtgattttctcaaatt 29787416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 43250037 - 43250005
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||| |||||||||||||||||||||    
T  43250037 taattacactgtattatgtcattttctcaaatt 43250005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 45431128 - 45431064
Alignment:
Q  66 acacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatg 130  Q
    |||| |||||||||||||| |    ||||||| ||||||||||||||  ||||||||||||||||    
T  45431128 acacgtgtcacacatccatgatggtaaatgggataaattgagcaaagacaaatggagcaaagatg 45431064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 6829988 - 6830058
Alignment:
Q  66 acacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactca 136  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6829988 acacatgtcacacatccattactagaaatggggtaaattgaggaaagtgaaatggagcaaagatgcactca 6830058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 6826627 - 6826558
Alignment:
Q  66 acacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  6826627 acacatgtcacacatccattattagaaatggggtaaattgaggaaagtgaaatggagcaaagatgcactc 6826558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 34260185 - 34260114
Alignment:
Q  66 acacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactcat 137  Q
    ||||||||||||||||||| ||| |||||||||||||||||| ||||  |||||||||||||||| ||||||    
T  34260185 acacatgtcacacatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactcat 34260114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 34262185 - 34262254
Alignment:
Q  66 acacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    ||||||||||||||||||| |||  ||||||||||||||||| ||||  |||||||||||||||| ||||    
T  34262185 acacatgtcacacatccataacttaaaatggggtaaattgaggaaaggaaaatggagcaaagatgaactc 34262254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 7569172 - 7569215
Alignment:
Q  247 accaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||||||| ||||||||||||||||||| |||||||||||||    
T  7569172 accaacacctataattacactgaattatgtaattttctcaaatt 7569215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 4420175 - 4420225
Alignment:
Q  239 tgtctgacaccaacacctttaattacactgaattatgtcattttctcaaat 289  Q
    |||||||||||||||||| |  |||||||||||||| ||||||||||||||    
T  4420175 tgtctgacaccaacacctatggttacactgaattatatcattttctcaaat 4420225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 7265589 - 7265640
Alignment:
Q  239 tgtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||| |||||| |||| | ||||||||||||||||||| |||||||||||||    
T  7265589 tgtccgacaccgacacatataattacactgaattatgtgattttctcaaatt 7265640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 13360368 - 13360419
Alignment:
Q  239 tgtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||| | || | ||||||||||||||||||| |||||||||||||    
T  13360368 tgtctgacaccgaaacatataattacactgaattatgtgattttctcaaatt 13360419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 28715358 - 28715307
Alignment:
Q  239 tgtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||| |||||| |||| | ||||||||||||||||||||||||| |||||||    
T  28715358 tgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaatt 28715307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 251 - 290
Target Start/End: Complemental strand, 34446616 - 34446577
Alignment:
Q  251 acacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  34446616 acacctatgattacactgaattatgtcattttctcaaatt 34446577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 9025495 - 9025541
Alignment:
Q  244 gacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||| |||| | ||||||||||||||||||| |||||||||||||    
T  9025495 gacaccgacacatataattacactgaattatgtgattttctcaaatt 9025541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 9195755 - 9195801
Alignment:
Q  244 gacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||| |||| | |||||||||| ||||||||||||||||||||||    
T  9195755 gacaccgacacatataattacactaaattatgtcattttctcaaatt 9195801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 32511667 - 32511713
Alignment:
Q  244 gacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||| | ||||||||||||||||||| ||||||| |||||    
T  32511667 gacaccaacacttataattacactgaattatgtgattttcttaaatt 32511713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 11591885 - 11591917
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  11591885 taattacactgaattatgtgattttctcaaatt 11591917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 19040396 - 19040364
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  19040396 taattacactgaattatgtgattttctcaaatt 19040364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 26562733 - 26562701
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  26562733 taattacactgaattatgtgattttctcaaatt 26562701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 31579240 - 31579272
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  31579240 taattacactgaattatgtgattttctcaaatt 31579272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 2367542 - 2367611
Alignment:
Q  66 acacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2367542 acacatgtcacacatccattactagaaatggggtaaattgaggaaagtgaaatggagcaaagatgcactc 2367611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 36878524 - 36878473
Alignment:
Q  239 tgtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||||||||    
T  36878524 tgtcagacaccgacacctataattacactgaattatgtgattttctcaaatt 36878473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 1764584 - 1764516
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    ||||||||| |||||||| |  | |||| |||||||||||||||| | |||||||||||||||| ||||    
T  1764584 cacatgtcatacatccatgatgataaatagggtaaattgagcaaacttaaatggagcaaagatggactc 1764516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 49399615 - 49399551
Alignment:
Q  66 acacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatg 130  Q
    |||| |||||||||||||| |    ||||||||||||||||||||||  ||||||||||||||||    
T  49399615 acacgtgtcacacatccatcaaggtaaatggggtaaattgagcaaaggcaaatggagcaaagatg 49399551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 2367479 - 2367514
Alignment:
Q  18 tttttctcatttaagaattgctttctccaagccatt 53  Q
    |||||||||||||||||||||||| |||||||||||    
T  2367479 tttttctcatttaagaattgctttttccaagccatt 2367514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 23636045 - 23636096
Alignment:
Q  239 tgtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||| |||| |  |||||||||||||||||| |||||||||||||    
T  23636045 tgtctgacaccgacacatacaattacactgaattatgtaattttctcaaatt 23636096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 27471566 - 27471613
Alignment:
Q  243 tgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||||||||| | |||||||||||||||||||  ||||||||||||    
T  27471566 tgacaccaacacatgtaattacactgaattatgtgcttttctcaaatt 27471613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 27890636 - 27890565
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactcatc 138  Q
    |||||||||||||||||| |    |||| || ||||||||||||||  |||||||||||||||| |||||||    
T  27890636 cacatgtcacacatccatgatggtaaataggataaattgagcaaaggcaaatggagcaaagatggactcatc 27890565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 28674863 - 28674812
Alignment:
Q  239 tgtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||||||||||||  | |||||| |||||||||||| |||||||||||||    
T  28674863 tgtctgacaccaacatatataattatactgaattatgtaattttctcaaatt 28674812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 40258929 - 40258980
Alignment:
Q  239 tgtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||| |||| | ||||||||||||||||||| ||||| |||||||    
T  40258929 tgtctgacaccgacacttgtaattacactgaattatgtgattttttcaaatt 40258980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 40747781 - 40747820
Alignment:
Q  251 acacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  40747781 acacctataattacattgaattatgtcattttctcaaatt 40747820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 5376501 - 5376547
Alignment:
Q  244 gacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||| |||| ||||||||||||||||||||| ||||||| |||||    
T  5376501 gacaccgacacttttaattacactgaattatgttattttcttaaatt 5376547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 6427408 - 6427362
Alignment:
Q  244 gacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||| | |||||||| |||||||||| |||||||||||||    
T  6427408 gacaccaacacatataattacattgaattatgtgattttctcaaatt 6427362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 7338799 - 7338869
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactcat 137  Q
    ||||||| ||||||| || ||| ||||||| |||||||||| |||   |||||||||||||||| ||||||    
T  7338799 cacatgttacacatctatgacttgaaatggagtaaattgaggaaacataaatggagcaaagatggactcat 7338869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 44482288 - 44482242
Alignment:
Q  244 gacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||| |||| | ||||||||||||||||||| |||||||||||||    
T  44482288 gacaccgacacatataattacactgaattatgtgattttctcaaatt 44482242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 1864882 - 1864927
Alignment:
Q  245 acaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||| |||| | ||||||||||||||||||| |||||||||||||    
T  1864882 acaccgacacatataattacactgaattatgtgattttctcaaatt 1864927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 10572591 - 10572636
Alignment:
Q  245 acaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||| |||| ||||||||||| ||||||||| |||||||||||||    
T  10572591 acaccgacacatttaattacaccgaattatgtgattttctcaaatt 10572636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 23738735 - 23738690
Alignment:
Q  245 acaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||||||| ||||||| ||||||||||||| ||||| |||||||    
T  23738735 acaccaacacatttaattgcactgaattatgtgattttttcaaatt 23738690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 42004953 - 42004994
Alignment:
Q  249 caacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||||| | |||||||| ||||||||||||||||||||||    
T  42004953 caacacctatgattacactaaattatgtcattttctcaaatt 42004994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 290
Target Start/End: Complemental strand, 42325601 - 42325572
Alignment:
Q  261 ttacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||||||||||||||    
T  42325601 ttacactgaattatgtcattttctcaaatt 42325572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 49400311 - 49400356
Alignment:
Q  91 aaatggggtaaattgagcaaagtgaaatggagcaaagatgcactca 136  Q
    ||||||| ||||||||||||||  |||||||||||||||| |||||    
T  49400311 aaatgggataaattgagcaaaggcaaatggagcaaagatggactca 49400356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 7918226 - 7918258
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  7918226 taattacactgaattatgtgattttctcaaatt 7918258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 19324606 - 19324574
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  19324606 taattacactgaattatgtgattttctcaaatt 19324574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 25098570 - 25098602
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  25098570 taattacactgaattatgtgattttctcaaatt 25098602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 25361930 - 25361898
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  25361930 taattacactgaattatgtgattttctcaaatt 25361898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 31015087 - 31015055
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  31015087 taattacactgaattatgtgattttctcaaatt 31015055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 34298480 - 34298448
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  34298480 taattacactgaattatgtgattttctcaaatt 34298448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 40181915 - 40181883
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  40181915 taattacactgaattatgtgattttctcaaatt 40181883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 49385153 - 49385085
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    |||||||||||||||||| | |  |||||||||||||   ||||| | |||||||||||||||| ||||    
T  49385153 cacatgtcacacatccatgattgtaaatggggtaaatgatgcaaacttaaatggagcaaagatggactc 49385085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 10925 - 10856
Alignment:
Q  66 acacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    |||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  10925 acacatgtcacacatccatgtcttcaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 10856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 17938219 - 17938174
Alignment:
Q  91 aaatggggtaaattgagcaaagtgaaatggagcaaagatgcactca 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  17938219 aaatggggtaaattgagcaaagtgaaatggagcaaagatgcactca 17938174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 17943013 - 17943081
Alignment:
Q  66 acacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    |||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||| ||||||||    
T  17943013 acacatgtcacacatccatgtcttcaaatggggtaaattgagcaaagtgaaatggagcaaa-atgcactc 17943081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 42578777 - 42578707
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactcat 137  Q
    ||||||||| ||||| || ||| ||||||||||||||||||||||   |||||||||||||||| ||||||    
T  42578777 cacatgtcatacatctatgacttgaaatggggtaaattgagcaaacataaatggagcaaagatggactcat 42578707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 6462616 - 6462685
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactca 136  Q
    ||||||||| ||||| |  ||| ||||||||||||||||||||||   |||||||||||||||| |||||    
T  6462616 cacatgtcatacatctaggacttgaaatggggtaaattgagcaaacataaatggagcaaagatggactca 6462685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 251 - 290
Target Start/End: Complemental strand, 3025602 - 3025563
Alignment:
Q  251 acacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||| ||||||||||||||||||| |||||||||||||    
T  3025602 acacctataattacactgaattatgtgattttctcaaatt 3025563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 8814483 - 8814541
Alignment:
Q  73 tcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgc 131  Q
    |||||||||||| ||| | |||||||||||||||| |||   |||||||||||||||||    
T  8814483 tcacacatccatgacttgtaatggggtaaattgaggaaaccaaaatggagcaaagatgc 8814541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 20679392 - 20679442
Alignment:
Q  240 gtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||||||| |||| | ||||||||||||| ||||| |||||||||||||    
T  20679392 gtctgacaccgacacttataattacactgaactatgtgattttctcaaatt 20679442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 42503093 - 42503031
Alignment:
Q  68 acatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatg 130  Q
    |||||||||||||| || |   |||||||||||||||||| ||| | ||||||||||||||||    
T  42503093 acatgtcacacatctatgatatgaaatggggtaaattgaggaaacttaaatggagcaaagatg 42503031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 11803316 - 11803271
Alignment:
Q  245 acaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||||||| | ||||||||||||||||||| ||||||| |||||    
T  11803316 acaccaacacatataattacactgaattatgtgattttcttaaatt 11803271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 12203350 - 12203411
Alignment:
Q  74 cacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    |||||||| || ||| |||||||  ||||||||| ||| |||||||||||||||||| ||||    
T  12203350 cacacatctatgacttgaaatggtataaattgaggaaaatgaaatggagcaaagatggactc 12203411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 12447778 - 12447839
Alignment:
Q  74 cacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    |||||||| || ||| |||||||  ||||||||| ||| |||||||||||||||||| ||||    
T  12447778 cacacatctatgacttgaaatggtataaattgaggaaaatgaaatggagcaaagatggactc 12447839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 38443102 - 38443033
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactca 136  Q
    |||||||||||||||||| |    ||||||||||||| ||||| | | |||||||||||||||| |||||    
T  38443102 cacatgtcacacatccatgatggtaaatggggtaaatggagcagacttaaatggagcaaagatggactca 38443033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 38443623 - 38443668
Alignment:
Q  91 aaatggggtaaattgagcaaagtgaaatggagcaaagatgcactca 136  Q
    ||||||||||||| ||||||| | |||||||||||||||| |||||    
T  38443623 aaatggggtaaatggagcaaacttaaatggagcaaagatggactca 38443668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 40332248 - 40332203
Alignment:
Q  245 acaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||| |||| | ||||||||||||||||||| |||||||||||||    
T  40332248 acaccgacacttgtaattacactgaattatgtgattttctcaaatt 40332203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 4611578 - 4611546
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  4611578 taattacactgaattatgttattttctcaaatt 4611546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 6461948 - 6461880
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    ||||||||| ||||| || ||| ||||||   |||||||||||||  ||||||||||||||||| ||||    
T  6461948 cacatgtcatacatctataacttgaaatgaaataaattgagcaaaccgaaatggagcaaagatgaactc 6461880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 7658507 - 7658475
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  7658507 taattacactgaattatgtaattttctcaaatt 7658475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 13203685 - 13203653
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  13203685 taattacactgaattatgtaattttctcaaatt 13203653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 14134743 - 14134711
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  14134743 taattacactgaattatgtgattttctcaaatt 14134711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 34201061 - 34201093
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    |||||||| ||||||||||||||||||||||||    
T  34201061 taattacattgaattatgtcattttctcaaatt 34201093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 34897129 - 34897097
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  34897129 taattacactgaattatgtgattttctcaaatt 34897097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 38443762 - 38443694
Alignment:
Q  68 acatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactca 136  Q
    ||||||||| || | || ||| |||||||||||||||| | ||| | |||||||||||||||| |||||    
T  38443762 acatgtcacgcaactatgacttgaaatggggtaaattgtggaaacttaaatggagcaaagatggactca 38443694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 44067560 - 44067528
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||| |||||||||||||||||||||    
T  44067560 taattacactgtattatgtcattttctcaaatt 44067528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 23514486 - 23514555
Alignment:
Q  67 cacatgtcacacatccattactag-aaatggggtaaattgagcaaagtgaaatggagcaaagatgcactca 136  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||||  |||||||||||||||| |||||    
T  23514486 cacatgtcacacatccatga-tagtaaatggggtaaattgagcaaaggcaaatggagcaaagatggactca 23514555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 20691382 - 20691331
Alignment:
Q  239 tgtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||| |||| | | |||||||||||||||||||||||||||||||    
T  20691382 tgtctgacaccgacacatatgattacactgaattatgtcattttctcaaatt 20691331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 35903757 - 35903695
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagat 129  Q
    |||||||||||||||||| ||| ||||||||||||||||||  ||   |||||||||||||||    
T  35903757 cacatgtcacacatccataacttgaaatggggtaaattgagagaacctaaatggagcaaagat 35903695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 8922952 - 8922884
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    |||||||||||||||||| |  | |||||||||||||||||||||   |||||||| ||||||| ||||    
T  8922952 cacatgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatggagtaaagatgaactc 8922884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 40810290 - 40810350
Alignment:
Q  71 tgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgc 131  Q
    |||||||||||||| |||  ||||||| ||||||||| ||| | |||||||||||||||||    
T  40810290 tgtcacacatccatgacttaaaatgggataaattgaggaaacttaaatggagcaaagatgc 40810350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 41325890 - 41325822
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    |||||||||||||||||| |  | |||||||||||||||||||||   |||||||| ||||||| ||||    
T  41325890 cacatgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatggagtaaagatgaactc 41325822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 255 - 290
Target Start/End: Complemental strand, 21149114 - 21149079
Alignment:
Q  255 ctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||| |||||||||||||||||||||||||||||||    
T  21149114 ctttgattacactgaattatgtcattttctcaaatt 21149079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 16192751 - 16192797
Alignment:
Q  244 gacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||| |||||| | ||||||||||||||||||| |||||||||||||    
T  16192751 gacatcaacacatataattacactgaattatgttattttctcaaatt 16192797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 23513732 - 23513686
Alignment:
Q  91 aaatggggtaaattgagcaaagtgaaatggagcaaagatgcactcat 137  Q
    ||||||| ||||||||||||||  |||||||||||||||| ||||||    
T  23513732 aaatgggataaattgagcaaagataaatggagcaaagatggactcat 23513686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 25948888 - 25948934
Alignment:
Q  244 gacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||| | ||||||||||||||||||| ||||| |||||||    
T  25948888 gacaccaacacttataattacactgaattatgtgattttttcaaatt 25948934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 290
Target Start/End: Original strand, 16789668 - 16789697
Alignment:
Q  261 ttacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||||||||||||||    
T  16789668 ttacactgaattatgtcattttctcaaatt 16789697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 20503522 - 20503477
Alignment:
Q  245 acaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||| |||| | ||||||||||||||||||||||||| |||||||    
T  20503522 acaccgacacttgtaattacactgaattatgtcattttttcaaatt 20503477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 25652037 - 25652078
Alignment:
Q  249 caacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||||| ||| ||||||||||||| |||||||||||||||    
T  25652037 caacacctataactacactgaattatatcattttctcaaatt 25652078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 1772935 - 1772876
Alignment:
Q  67 cacatgtcacacatccattactag-aaatggggtaaattgagcaaagtgaaatggagcaaa 126  Q
    ||||||||||| |||||| | ||| ||||||||||||||||||||| | ||||||||||||    
T  1772935 cacatgtcacatatccatga-tagtaaatggggtaaattgagcaaacttaaatggagcaaa 1772876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 4987294 - 4987338
Alignment:
Q  246 caccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||| | ||||||||||||||||||| ||||| |||||||    
T  4987294 caccaacacttgtaattacactgaattatgtgattttttcaaatt 4987338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 8923627 - 8923695
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    |||||||||||||||||| |    ||||||||||||| |||||||   |||||||||||||||| ||||    
T  8923627 cacatgtcacacatccatgatggtaaatggggtaaatggagcaaacccaaatggagcaaagatggactc 8923695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 11252022 - 11251990
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  11252022 taattacactgaattatgtgattttctcaaatt 11251990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 24205056 - 24205088
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||| |||||||||||||||||||||    
T  24205056 taattacactgtattatgtcattttctcaaatt 24205088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 50107636 - 50107592
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaa 111  Q
    |||||||||||||||||| |  | |||||||||||||||||||||    
T  50107636 cacatgtcacacatccatgatgataaatggggtaaattgagcaaa 50107592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 34228215 - 34228147
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    ||||||||||||||| || ||| |||||||||||||||||| ||  | |||||||||||||||| ||||    
T  34228215 cacatgtcacacatctataacttgaaatggggtaaattgaggaatcttaaatggagcaaagatggactc 34228147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 35029862 - 35029924
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagat 129  Q
    ||||||||||||||| || ||| |||||||||||||||||| |||   |||||||||||||||    
T  35029862 cacatgtcacacatctatgacttgaaatggggtaaattgaggaaacctaaatggagcaaagat 35029924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 34229075 - 34229143
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    ||||||||||||||| || |||  ||||||||||||||||| ||  | |||||||||||||||| ||||    
T  34229075 cacatgtcacacatctatgacttaaaatggggtaaattgaggaatcttaaatggagcaaagatggactc 34229143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 290
Target Start/End: Original strand, 10535776 - 10535806
Alignment:
Q  260 attacactgaattatgtcattttctcaaatt 290  Q
    |||||||||||||||||||||||||||||||    
T  10535776 attacactgaattatgtcattttctcaaatt 10535806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 12668424 - 12668470
Alignment:
Q  244 gacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||| |||| | ||||||||||||||||||||||||| |||||||    
T  12668424 gacaccgacacttataattacactgaattatgtcattttttcaaatt 12668470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 12748737 - 12748696
Alignment:
Q  249 caacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||||| | ||||||||||| |||||||||||||||||||    
T  12748737 caacacctatgattacactgaactatgtcattttctcaaatt 12748696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 29762260 - 29762305
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaag 112  Q
    ||||||||||||||||||  || || ||||||||||||||||||||    
T  29762260 cacatgtcacacatccatgtcttgagatggggtaaattgagcaaag 29762305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 30563462 - 30563421
Alignment:
Q  249 caacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||||| || ||||| ||||||||||||||||||||||||    
T  30563462 caacacctatagttacattgaattatgtcattttctcaaatt 30563421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 34006993 - 34007038
Alignment:
Q  245 acaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||| |||||| | ||||||||||||||||||| |||||||||||    
T  34006993 acaccgacacctatgattacactgaattatgtcaatttctcaaatt 34007038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 37491851 - 37491900
Alignment:
Q  239 tgtctgacaccaacacctttaattacactgaattatgtcattttctcaaa 288  Q
    ||||||||||| |||| |||||||||| ||||||| || |||||||||||    
T  37491851 tgtctgacaccgacacatttaattacattgaattaagttattttctcaaa 37491900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 21616806 - 21616774
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  21616806 taattacactgaattatgtgattttctcaaatt 21616774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 21782833 - 21782865
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  21782833 taattacactgaattatgtgattttctcaaatt 21782865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 23921297 - 23921265
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  23921297 taattacactgaattatgtaattttctcaaatt 23921265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 28588670 - 28588721
Alignment:
Q  239 tgtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||||||||    
T  28588670 tgtccgacaccgacacctataattacactgaattatgtgattttctcaaatt 28588721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 2639779 - 2639717
Alignment:
Q  68 acatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatg 130  Q
    |||||| ||||||| || ||| ||||||||||||||||||||||   ||||||||||||||||    
T  2639779 acatgttacacatctataacttgaaatggggtaaattgagcaaaaataaatggagcaaagatg 2639717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 120138 - 120073
Alignment:
Q  70 atgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 135  Q
    ||||||| |||| || ||| |||||||||||||||||| ||||  |||||||||||||||| ||||    
T  120138 atgtcacgcatctataacttgaaatggggtaaattgaggaaagctaaatggagcaaagatgaactc 120073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 41558662 - 41558701
Alignment:
Q  251 acacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  41558662 acacatttaattacattgaattatgtcattttctcaaatt 41558701  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 6471890 - 6471936
Alignment:
Q  244 gacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||| |||| | ||||||||||||||||||| |||||||||||||    
T  6471890 gacacccacacatataattacactgaattatgtgattttctcaaatt 6471936  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 23015997 - 23016035
Alignment:
Q  251 acacctttaattacactgaattatgtcattttctcaaat 289  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  23015997 acacctataattacactgaattatgtgattttctcaaat 23016035  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 290
Target Start/End: Complemental strand, 31264480 - 31264450
Alignment:
Q  260 attacactgaattatgtcattttctcaaatt 290  Q
    |||||||||||||||||||||||||||||||    
T  31264480 attacactgaattatgtcattttctcaaatt 31264450  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 21194125 - 21194170
Alignment:
Q  245 acaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||||| |||| |||||||||||||| |||| |||||||||||||    
T  21194125 acaccaatacctataattacactgaatgatgtgattttctcaaatt 21194170  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 24906295 - 24906348
Alignment:
Q  237 catgtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||| || ||| |||| | ||||||||||||||||||||||||| |||||||    
T  24906295 catgtccgataccgacacttgtaattacactgaattatgtcattttttcaaatt 24906348  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 26205768 - 26205805
Alignment:
Q  251 acacctttaattacactgaattatgtcattttctcaaa 288  Q
    |||||| | |||||||||||||||||||||||||||||    
T  26205768 acacctatgattacactgaattatgtcattttctcaaa 26205805  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 38749565 - 38749610
Alignment:
Q  245 acaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    |||||||||| | |||||||| |||||||||||||||| |||||||    
T  38749565 acaccaacacatataattacattgaattatgtcattttttcaaatt 38749610  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 6326312 - 6326344
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  6326312 taattacactgaattatgtaattttctcaaatt 6326344  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 24273045 - 24273077
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  24273045 taattacactgaattatgtgattttctcaaatt 24273077  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 24389169 - 24389137
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  24389169 taattacactgaattatgtgattttctcaaatt 24389137  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 25863248 - 25863216
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||| |||||||||||||||    
T  25863248 taattacactgaattatatcattttctcaaatt 25863216  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 27932279 - 27932247
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  27932279 taattacactgaattatgtaattttctcaaatt 27932247  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 43001856 - 43001812
Alignment:
Q  246 caccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||| | ||||||||||||||||||| ||||| |||||||    
T  43001856 caccaacacttgtaattacactgaattatgtaattttttcaaatt 43001812  T

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Target: scaffold0049 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 63836 - 63785
Alignment:
Q  239 tgtctgacaccaacacctttaattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||| |||| | ||||| ||||||||||||| |||||||||||||    
T  63836 tgtctgacaccgacacttgtaattgcactgaattatgtaattttctcaaatt 63785  T

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Target: scaffold0598 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 290
Target Start/End: Original strand, 8071 - 8100
Alignment:
Q  261 ttacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||||||||||||||    
T  8071 ttacactgaattatgtcattttctcaaatt 8100  T

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Target: scaffold0291 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 19375 - 19444
Alignment:
Q  67 cacatgtcacacatccattactagaaatggggtaaattgagcaaag-tgaaatggagcaaagatgcactc 135  Q
    ||||||||||| |||||   ||| ||||||||||||||||| || | | |||||||||||||||||||||    
T  19375 cacatgtcacatatccacgtctaaaaatggggtaaattgagaaatgataaaatggagcaaagatgcactc 19444  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 44540 - 44572
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  44540 taattacactgaattatgtgattttctcaaatt 44572  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 53224 - 53192
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  53224 taattacactgaattatgtgattttctcaaatt 53192  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 92851 - 92819
Alignment:
Q  258 taattacactgaattatgtcattttctcaaatt 290  Q
    ||||||||||||||||||| |||||||||||||    
T  92851 taattacactgaattatgtaattttctcaaatt 92819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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