View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_high_5 (Length: 668)
Name: NF19289_high_5
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 157 - 650
Target Start/End: Complemental strand, 19577591 - 19577098
Alignment:
| Q |
157 |
ttcattcattcaattctcaaccccttttttcttcactcaattatcacactatggttcgtgaacacagagtcgattcattctacaccaaactccgtcaatc |
256 |
Q |
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| T |
19577591 |
ttcattcattcaattctcaaccccttctttcttcactcaattatcacactatggttcgtgaacacagagtcgattcattttacacaaaactccgtcagtc |
19577492 |
T |
|
| Q |
257 |
cgcccaactttcttccaccacatcccccgtcctcattttcccctcaacctccgacgtcgattccctctgcgcactcaaaacccttttccgtattctcgaa |
356 |
Q |
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| T |
19577491 |
cgcccaactttcttccaccacatcccccgtcctcattttcccctcaacctccgacgtcgattccctctgcgcactcaaaacccttttccgtattctcgaa |
19577392 |
T |
|
| Q |
357 |
tccgattcaattcaatacgcatcttaccccgtttcatccttccgcgaaattcataattatgctaaacccaccccccaaaacattaaccacacctccattg |
456 |
Q |
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| T |
19577391 |
tccgattcaattcaatacgcatcttaccccgtttcatccttccgcgaaattcataattatgctaaacccaccccccaaaacattaaccacacctccattg |
19577292 |
T |
|
| Q |
457 |
ttttaatcaactggggctctcataaagatcttcgcaaaatacttaacttaggtccttatgctactatcttcgttatcgatagtcaccgtccgattcatct |
556 |
Q |
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| T |
19577291 |
ttttaatcaactggggctctcataaagatcttcgcaaaatacttaacttaggtccttatgctactatcttcgttatcgatagtcaccgtccgattcatct |
19577192 |
T |
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| Q |
557 |
tcataatctcagtgaccagaatgattctgttgttgttctttttactcaagaagatgaaaaacaagcggatctcgcttatgattttgattttcct |
650 |
Q |
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| T |
19577191 |
tcataatctcagtgaccagaatgattctgttgttgttctttttactcaagaagatgaaaaacaagcggatctcgcttatgattttgattttcct |
19577098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 19577731 - 19577656
Alignment:
| Q |
13 |
aaaatcataacaataccgccaaattttcacgccgcgcctcctcaaattttcaaattcccccatcttcataactctc |
88 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19577731 |
aaaatcacaacaataccgccaaattttcacgccgcgcctcctcaaattttcaaattcccccatcttcataactctc |
19577656 |
T |
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