View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_high_57 (Length: 252)
Name: NF19289_high_57
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_high_57 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 45354708 - 45354468
Alignment:
| Q |
12 |
ataatactactaatattatgcttcttccaggattcgtagaaccggagaacttttgacctatattcgcactttgaagatgtatggatgggaacttcttttt |
111 |
Q |
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| T |
45354708 |
ataatactactaatattatgcttcttccaggattcgtagaaccggagaacttttgacctatattcgcactttgaagatgtatggatgggaacttcttttt |
45354609 |
T |
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| Q |
112 |
tctagttggttgatggcgacaagatccttggaagtgaaacacttggctgtaagactttatgnnnnnnngctcttagaagctgctaagatactttcgtttt |
211 |
Q |
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| T |
45354608 |
tctagttggttgatggcgacaagatccttggaagtgaaacacttggctgtaagactttatgaaaaaaagctcttagaagctgctaagatactttcgtttt |
45354509 |
T |
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| Q |
212 |
cttcttattttattttgatcatcatgtttcatctgtgtttt |
252 |
Q |
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| T |
45354508 |
cttcttattttattttgatcatcatgtttcatctgtgtttt |
45354468 |
T |
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