View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19289_high_61 (Length: 250)
Name: NF19289_high_61
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_high_61 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 49824827 - 49825059
Alignment:
| Q |
2 |
gtagcatagggacaacgaatgggtcgtttttaaacatgaagaaaaaatttgattgtattataatataggtaatgttacctccactggcgtgtcaccggat |
101 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49824827 |
gtagaataaggacaacgaatgggtcgtttttaaacatgaagaaaaaatttgattatattatagtataggtaatgttacctccactggcgtgtcaccggat |
49824926 |
T |
|
| Q |
102 |
agattcagcatattgtcgtgtgtatcttcgtctatatcttcatgaccaaccttcatnnnnnnnnctcacttgataagtaaaaaataaactacattatata |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
49824927 |
agattcagcatattgtcgtgtgtatcttcgtctatatcttcatgaccaaccttcataaaaaaaacttacttgataagtaaaaaataaactacattatata |
49825026 |
T |
|
| Q |
202 |
atctgtatatggatcattaacataagtttaaag |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
49825027 |
atctgtatatggatcattaacataagtttaaag |
49825059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University