View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_high_67 (Length: 241)
Name: NF19289_high_67
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_high_67 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 31053355 - 31053582
Alignment:
| Q |
1 |
tgatgttgtatcacagatgcgaagagtctcgcatttaagtgagagatgttgcgatatgttaacgtgagttagagacccatattggatggaagcgtaacat |
100 |
Q |
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| T |
31053355 |
tgatgttgtatcacagacgtggagagtctcacatttgagtgagagatgttgcgatatgtcaacgtgagttagagacccatattggatggaagagtaacat |
31053454 |
T |
|
| Q |
101 |
ataagtgagatgacccataaactcaatatctcaaggttttgggtgaaaatttaatgttcaatttcatttgtttgattgtt-ttatgtgaaaattccacct |
199 |
Q |
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| T |
31053455 |
ataagtgagatgacccataaactcaatatctcaaggttttgggtgaaaatttaatgtccaatttcatttgtgtgattgttcttacgtgaaaattccacct |
31053554 |
T |
|
| Q |
200 |
acaattacggtacaatgaacgtaaatat |
227 |
Q |
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| T |
31053555 |
acaattacggtacaatgaacgtaaatat |
31053582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 17229277 - 17229233
Alignment:
| Q |
96 |
aacatataagtgagatgacccataaactcaatatctcaaggtttt |
140 |
Q |
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| T |
17229277 |
aacatataagtgaaatgacccataaactcgataccttaaggtttt |
17229233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 33561554 - 33561510
Alignment:
| Q |
100 |
tataagtgagatgacccataaactcaatatctcaaggttttgggt |
144 |
Q |
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| T |
33561554 |
tataagtgagaggacccataaactcattgtcttaaggttttgggt |
33561510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 11442904 - 11442955
Alignment:
| Q |
96 |
aacatataagtgagatgacccataaactcaatatctcaaggttttgggtgaa |
147 |
Q |
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|||||| |||||||| |||||||||||||||| || ||||||||||||||| |
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| T |
11442904 |
aacatacaagtgagaggacccataaactcaatgccttaaggttttgggtgaa |
11442955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 10020178 - 10020227
Alignment:
| Q |
96 |
aacatataagtgagatgacccataaactcaatatctcaaggttttgggtg |
145 |
Q |
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||||||||||||||||||| |||| ||| ||||||| ||| ||||||||| |
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| T |
10020178 |
aacatataagtgagatgactcatatacttaatatcttaagattttgggtg |
10020227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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