View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_high_74 (Length: 236)
Name: NF19289_high_74
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_high_74 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 43974294 - 43974500
Alignment:
| Q |
14 |
ttattcttggtggtcaacaaatgactggaagacttcataggcttgatgaaggtgacaaattcaagaaatatgaaagtggattgttattaggtcctaatgc |
113 |
Q |
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| T |
43974294 |
ttattcttggtggtcaacaaatgactggaagacttcataggcttgatgaaggtgacaaattcaagaaatatgaaagtggattgttattaggtcctaatgc |
43974393 |
T |
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| Q |
114 |
acctacttataatccaaagaagtttcatgagttgatttcaaagggaattgaatatgagaaattggtgaagcaaaaagaggactctatcttatctaagagt |
213 |
Q |
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| T |
43974394 |
acctacttataatccaaagaagtttcatgagttgatttcaaagggaattgaatatgagaaattggtgaaggaaaaagaggactctatcttatctaagagt |
43974493 |
T |
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| Q |
214 |
tctgatt |
220 |
Q |
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||||||| |
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| T |
43974494 |
tctgatt |
43974500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 43564305 - 43564151
Alignment:
| Q |
17 |
ttcttggtggtcaacaaatgactggaagacttcataggcttgatgaaggtgacaaattcaagaaatatgaaagtggattgttattaggtcctaatgcacc |
116 |
Q |
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||||||| ||| |||||||||||||||| ||||||||| ||| |||||| ||||| ||| | ||||||||||||||||||||| ||||||||||| |||| |
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| T |
43564305 |
ttcttgggggtgaacaaatgactggaaggcttcataggtttggtgaaggagacaagttccaaaaatatgaaagtggattgttactaggtcctaattcacc |
43564206 |
T |
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| Q |
117 |
tacttataatccaaagaagtttcatgagttgatttcaaagggaattgaatatgag |
171 |
Q |
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| T |
43564205 |
tccttttaatccaaaaacgattaaggagttgattttaaagggaattgaacatgag |
43564151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 36432260 - 36432057
Alignment:
| Q |
17 |
ttcttggtggtcaacaaatgactggaagacttcataggcttgatgaaggtgacaaattcaagaaatatgaaagtggattgttattaggtcctaatgcacc |
116 |
Q |
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||||||||||| |||| |||||||| || |||||||||||||||||||||||||| ||||| ||||| |||||||||||| | || ||||||||| |||| |
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| T |
36432260 |
ttcttggtggtgaacagatgactgggaggcttcataggcttgatgaaggtgacaagttcaaaaaatacgaaagtggattggtgttgggtcctaattcacc |
36432161 |
T |
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| Q |
117 |
tacttataatccaaagaagtttcatgagttgatttcaaagggaattgaatatgagaaattggtgaagcaaaaagaggactctatcttatctaagagttct |
216 |
Q |
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| ||| |||||| || | || | ||||||||| |||||||||||||| ||||| | |||| || |||| |||||| | | ||||| ||||||||| |
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| T |
36432160 |
tccttttaatccgaaaacaattaaggagttgattacaaagggaattgaacatgagcatttggagagacaaagagaggaggcagttttatccaagagttct |
36432061 |
T |
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| Q |
217 |
gatt |
220 |
Q |
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|||| |
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| T |
36432060 |
gatt |
36432057 |
T |
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