View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19289_high_8 (Length: 572)
Name: NF19289_high_8
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 9 - 478
Target Start/End: Original strand, 24513963 - 24514435
Alignment:
| Q |
9 |
acaacaactatactttgaagcttcaacaaaatcacgaaataactttgtcattgtacttttgttaatctctccgtcaaaccaaagatgcgttaatatggta |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24513963 |
acaacaactatactttgaagcttcaacaaaatcacgaaataactttgtcattgtatttttgttaatctctccgtcaaaccaaagatgcgttaatatggta |
24514062 |
T |
|
| Q |
109 |
caaagcagcaaaagcagaggatattacctacaataatagcccctaggggctcagccaagccagaaagagatgccaatttgaatgcttgccatttactatg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24514063 |
caaagcagcaaaagcagaggatattacctacaataataacccctaggggctcagccaagccagaaagagatgccaatttgaatgcttgccatttactatg |
24514162 |
T |
|
| Q |
209 |
acacatcacagaaataaaat-nnnnnnngttacaactcgagtaatataattggcaaatcttct-nnnnnnntatcgtattttcaagaatttgatggcata |
306 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
24514163 |
acacatcacagaaataaaataaaaaaaagttacaactcgagtaatataattggcaaatcttataaaaaaaatatcgtattttcaagaatttgatagcata |
24514262 |
T |
|
| Q |
307 |
tatattagcattgt-nnnnnnnnnttataccgatttctgataagaagccgtcaattttctatgtcacactatcaatttcgaaaatgaagtgatgtgccaa |
405 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24514263 |
tatattagcattgtaaaaaaaaatttacaccgatttctgataagaagtcgtcaattttctatgtcacactatcaatttcgaaaatgaagtgatgtgcaaa |
24514362 |
T |
|
| Q |
406 |
aataatggattctcgtgaatatcaatgtaaaaccgttttaagtacataccctttgatttctttttaataatac |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
24514363 |
aataatggattctcgtgaatatcaatgtaaaaccgttttaagtacgtaccctttaatttctttttaataatac |
24514435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University