View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_high_84 (Length: 217)
Name: NF19289_high_84
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_high_84 |
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| [»] chr8 (7 HSPs) |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 6309847 - 6310057
Alignment:
| Q |
7 |
atgtcgaagaatatatctttctctttatcatccaattcattataactcaatctgaatataaaatcaatttcagtgtttggaatttctttcagtttagcca |
106 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6309847 |
atgtctaaaaatatatctttctctttatcatccaattcattataactcaatctgaatataaaatcaatttcagtgtttggaatttctttcagtttagcca |
6309946 |
T |
|
| Q |
107 |
gtgcacaatcccattcaatttcacttttacaacgaagtaatgatcccaatactctcaaagctaaaggatttcctttggcataatcaactgctctttttga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6309947 |
gtgcacaatcccattcaatttcacttttacaacgaagtaatgatcccaatactttcaaagctaaaggatttcctttggcataatcaactgctctttttga |
6310046 |
T |
|
| Q |
207 |
gagctccacat |
217 |
Q |
| |
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||||||||||| |
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| T |
6310047 |
gagctccacat |
6310057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 14405441 - 14405231
Alignment:
| Q |
7 |
atgtcgaagaatatatctttctctttatcatccaattcattataactcaatctgaatataaaatcaatttcagtgtttggaatttctttcagtttagcca |
106 |
Q |
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||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||| |||||||||||| | |
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| T |
14405441 |
atgtccaaaaatatatctttctctttatcatccaattcatcataactcaatctgaatatagaatcaatttcgttgtttggaatttttttcagtttagcta |
14405342 |
T |
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| Q |
107 |
gtgcacaatcccattcaatttcacttttacaacgaagtaatgatcccaatactctcaaagctaaaggatttcctttggcataatcaactgctctttttga |
206 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| || ||||| |||||||||||||||||||||||||| |
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| T |
14405341 |
atgcacagtcccattcaatttcacttttacaacgaagtaaagatcccaatactttcaaagctaacgggtttccgttggcataatcaactgctctttttga |
14405242 |
T |
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| Q |
207 |
gagctccacat |
217 |
Q |
| |
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||||||||||| |
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| T |
14405241 |
gagctccacat |
14405231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 5607445 - 5607626
Alignment:
| Q |
36 |
atccaattcattataactcaatctgaatataaaatcaatttcagtgtttggaatttctttcagtttagccagtgcacaatcccattcaatttcactttta |
135 |
Q |
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||||||||||||| |||||| ||| |||||| |||||||||| ||||||| |||| |||||||||| | | ||||||||||||||| ||||||||||| |
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| T |
5607445 |
atccaattcattaaaactcattctaaatatagaatcaatttcgttgtttggcatttttttcagtttatctaatgcacaatcccattctttttcactttta |
5607544 |
T |
|
| Q |
136 |
caacgaagtaatgatcccaatactctcaaagctaaaggatttcctttggcataatcaactgctctttttgagagctccacat |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
5607545 |
caacgaagtaatgatcccaatactttcaaagctaaagggtttcctctggcataatcaattgctctttttgagagctccacat |
5607626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 36 - 217
Target Start/End: Complemental strand, 5627925 - 5627744
Alignment:
| Q |
36 |
atccaattcattataactcaatctgaatataaaatcaatttcagtgtttggaatttctttcagtttagccagtgcacaatcccattcaatttcactttta |
135 |
Q |
| |
|
||||||||||||| |||||| ||| |||||| |||||||||| ||||||| |||| |||||||||| | | ||||||||||||||| ||||||||||| |
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| T |
5627925 |
atccaattcattaaaactcattctaaatatagaatcaatttcgttgtttggcatttttttcagtttatctaatgcacaatcccattctttttcactttta |
5627826 |
T |
|
| Q |
136 |
caacgaagtaatgatcccaatactctcaaagctaaaggatttcctttggcataatcaactgctctttttgagagctccacat |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
5627825 |
caacgaagtaatgatcccaatactttcaaagctaaagggtttcctctggcataatcaattgctctttttgagagctccacat |
5627744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 36 - 217
Target Start/End: Complemental strand, 5550484 - 5550303
Alignment:
| Q |
36 |
atccaattcattataactcaatctgaatataaaatcaatttcagtgtttggaatttctttcagtttagccagtgcacaatcccattcaatttcactttta |
135 |
Q |
| |
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||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |||| | |||||||||| ||||||||||||||| ||||| ||||| |
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| T |
5550484 |
atccaattcattaaaactcaatctgaatatagaatcaatttcattgtttggtatttttctcagtttagctgatgcacaatcccattctttttcattttta |
5550385 |
T |
|
| Q |
136 |
caacgaagtaatgatcccaatactctcaaagctaaaggatttcctttggcataatcaactgctctttttgagagctccacat |
217 |
Q |
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|||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
5550384 |
caactaagtaatgatcccaatacttgtaaagctaaagggtttcctctggcataatcaattgctctttttgagagctccacat |
5550303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 13165605 - 13165396
Alignment:
| Q |
7 |
atgtcgaagaatatatctttctctttatcatccaattcattataactcaatctgaatataaaatcaatttcagtgtttggaatttctttcagtttagcca |
106 |
Q |
| |
|
||||| || ||||||| ||||||||||||||||||||||||||||||| |||| | ||| ||||||||| | || | ||||| | |||||||| || |
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| T |
13165605 |
atgtccaaaaatatatttttctctttatcatccaattcattataactccatcttagtatcctatcaatttcggcattggaaattttctccagtttagaca |
13165506 |
T |
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| Q |
107 |
gtgcacaatcccattcaatttcacttttacaacgaagtaatgatcccaatactctcaaagctaaaggatttcctttggcataatcaactgctctttttga |
206 |
Q |
| |
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||||||||| |||||| ||||||||||| ||||||||| |||||||||| ||| ||| ||||||||| | |||||||| ||||||| ||||||||||| |
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| T |
13165505 |
gtgcacaattccattctatttcacttttgcaacgaagtgatgatcccaaaactttcagagctaaagggatgcctttggcgtaatcaatcgctctttttga |
13165406 |
T |
|
| Q |
207 |
gagctccaca |
216 |
Q |
| |
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|||||||||| |
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| T |
13165405 |
gagctccaca |
13165396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 217
Target Start/End: Complemental strand, 32633974 - 32633781
Alignment:
| Q |
24 |
tttctctttatcatccaattcattataactcaatctgaatataaaatcaatttcagtgtttggaatttctttcagtttagccagtgcacaatcccattca |
123 |
Q |
| |
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||||||||||||||| ||||||||||||||| |||| | ||| ||| ||||| | || |||||||| ||||||||||| | |||||| | |||||| |
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| T |
32633974 |
tttctctttatcatctaattcattataactccatctcattatcttatcgatttctgcattgggaatttccttcagtttagctaatgcacagttccattct |
32633875 |
T |
|
| Q |
124 |
atttcacttttacaacgaagtaatgatcccaatactctcaaagctaaaggatttcctttggcataatcaactgctctttttgagagctccacat |
217 |
Q |
| |
|
||||||||||| | || ||| ||||||||||| ||| | | ||||||||| || |||||||| ||||||| |||||| |||||||||||||| |
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| T |
32633874 |
atttcacttttgctacaaagaaatgatcccaaaacttttagagctaaagggttgcctttggcgtaatcaatcactctttctgagagctccacat |
32633781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 13412 - 13622
Alignment:
| Q |
7 |
atgtcgaagaatatatctttctctttatcatccaattcattataactcaatctgaatataaaatcaatttcagtgtttggaatttctttcagtttagcca |
106 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||| |||||||||||| | |
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| T |
13412 |
atgtccaaaaatatatctttctctttatcatccaattcatcataactcaatctgaatatagaatcaatttcgttgtttggaatttttttcagtttagcta |
13511 |
T |
|
| Q |
107 |
gtgcacaatcccattcaatttcacttttacaacgaagtaatgatcccaatactctcaaagctaaaggatttcctttggcataatcaactgctctttttga |
206 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| || ||||| |||||||||||||||||||||||||| |
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| T |
13512 |
atgcacagtcccattcaatttcacttttacaacgaagtaaagatcccaatactttcaaagctaacgggtttccgttggcataatcaactgctctttttga |
13611 |
T |
|
| Q |
207 |
gagctccacat |
217 |
Q |
| |
|
||||||||||| |
|
|
| T |
13612 |
gagctccacat |
13622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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