View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_high_9 (Length: 569)
Name: NF19289_high_9
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 129 - 508
Target Start/End: Original strand, 55168941 - 55169319
Alignment:
| Q |
129 |
tcttttctattgacaaagatagctgagagcggtgactaataagttaaatatgagttaagagcaacaaaggattaatacgaccctatataaaaatctaagt |
228 |
Q |
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| T |
55168941 |
tcttttctattgacagaggtagctgagagcggcgactaataagttaaatatgagttaaaagtaacaaaggattaatgcgaccctatataaaaatctaagt |
55169040 |
T |
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| Q |
229 |
gactagtttggatataannnnnnnatccaagactagttgcaaggaaattacgaaagatcaaattggggtaaagtctaaaaatactcaagaacgatagtgt |
328 |
Q |
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| T |
55169041 |
gactagtttggatataatttttttatataagactagttgcaaggaaattacgaaagatcaaattggg-taaagtctaaaaatactcaagaacgatagtgt |
55169139 |
T |
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| Q |
329 |
agcttacttgttaccgaggagagtgtggagttttatgatgagttgatcttcttgttgggtgaaatttccacgtttgaggtcggggcggaggtagttgatc |
428 |
Q |
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| T |
55169140 |
agcttacttgttaccgaggagagtgtggagttttatgatgagttgatcttcttgttgggtgaaatttccacgtttgaggtcggggcgtaggtagttgatc |
55169239 |
T |
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| Q |
429 |
caccggagacggcaactcttaccgcaacggagaagaccagcggcttttcggagagagcgccagcatccctcaccgtgagc |
508 |
Q |
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| T |
55169240 |
caccggagacggcaactcttaccgcaacggagaagaccagcggcttttgggagagagcgccagcatccctcaccgtgagc |
55169319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 55164712 - 55164807
Alignment:
| Q |
18 |
aagcaggagcaccagaagatcccccataaacaggtttgccttttcgctcgctattctcatttatttatttattagataaaccctaataataaataa |
113 |
Q |
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| T |
55164712 |
aagcagcagcaccagaagatcccccataaacaggtttgccttttcgctcgctattctcatttatttatttattagataaaccctaataatagataa |
55164807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 524 - 560
Target Start/End: Original strand, 55169319 - 55169355
Alignment:
| Q |
524 |
cagccgctcatcttcttctttgctccatgctcctttg |
560 |
Q |
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| T |
55169319 |
cagccgctcatcttcttctttgctccatgctcctttg |
55169355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 560
Target Start/End: Complemental strand, 27808307 - 27808078
Alignment:
| Q |
331 |
cttacttgttaccgaggagagtgtggagttttatgatgagttgatcttcttgttgggtgaaatttccacgtttgaggtcggggcggaggtagttgatcca |
430 |
Q |
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| T |
27808307 |
cttacttgttaccaagaagactatggagtttgatgatgagttcatcttcttcttctgtaaagttaccacgtttaaggtctggcctgagatagttaatcca |
27808208 |
T |
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| Q |
431 |
ccggagacggcaactcttaccgcaacggagaagaccagcggcttttcggagagagcgccagcatccctcaccgtgagctctaatataagctatcagccgc |
530 |
Q |
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| T |
27808207 |
ccggagacgacaacttttaccacatcggagtaagccagctgctttagggagagatctccaacaaccttcaccatgtgccctaatatatgatataagtcta |
27808108 |
T |
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| Q |
531 |
tcatcttcttctttgctccatgctcctttg |
560 |
Q |
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| T |
27808107 |
tcatcttcttcttttgtccaagctcctttg |
27808078 |
T |
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