View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19289_low_13 (Length: 557)

Name: NF19289_low_13
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19289_low_13
NF19289_low_13
[»] chr8 (3 HSPs)
chr8 (234-522)||(45163755-45164040)
chr8 (234-335)||(24948543-24948643)
chr8 (135-175)||(30473881-30473921)
[»] chr4 (5 HSPs)
chr4 (27-173)||(26724028-26724174)
chr4 (235-344)||(40835481-40835590)
chr4 (237-337)||(29888744-29888843)
chr4 (237-317)||(40608233-40608313)
chr4 (234-325)||(11669628-11669718)
[»] chr1 (4 HSPs)
chr1 (27-173)||(45115427-45115574)
chr1 (234-312)||(47383627-47383705)
chr1 (245-337)||(19596520-19596612)
chr1 (135-168)||(36465887-36465920)
[»] chr2 (3 HSPs)
chr2 (27-172)||(2988804-2988950)
chr2 (237-327)||(13567699-13567789)
chr2 (276-339)||(14438927-14438990)
[»] chr6 (2 HSPs)
chr6 (365-473)||(24124347-24124455)
chr6 (135-172)||(15044914-15044951)
[»] chr5 (3 HSPs)
chr5 (238-332)||(38256918-38257012)
chr5 (249-333)||(1054225-1054309)
chr5 (234-337)||(14536129-14536232)
[»] chr3 (4 HSPs)
chr3 (234-299)||(215600-215665)
chr3 (105-172)||(5189787-5189854)
chr3 (135-173)||(49506348-49506386)
chr3 (135-175)||(12264392-12264432)
[»] chr7 (7 HSPs)
chr7 (234-308)||(42987724-42987797)
chr7 (276-326)||(17298587-17298637)
chr7 (277-325)||(6204050-6204098)
chr7 (260-315)||(19777820-19777875)
chr7 (135-172)||(21670173-21670210)
chr7 (135-172)||(27138528-27138565)
chr7 (133-173)||(27903416-27903456)
[»] scaffold0468 (1 HSPs)
scaffold0468 (515-547)||(10346-10378)


Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 234 - 522
Target Start/End: Complemental strand, 45164040 - 45163755
Alignment:
Q  234 cagtcacatcgattaatatcatttaattttatttccatttaaatttttctatgctttgtgagtgtgcccaaatcattttgatatggggttgtgctcatct 333  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  45164040 cagtcacatcaattaatatcatttaattttattttcatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatctggggttgtgctcatct 45163941  T
Q  334 aagattatctctaagatgtaaaatgatgattgatatccttgattcaacgtcatccacctgttccactaagcatcgagaaaataaaagataagttattcaa 433  Q
    |||| | |||  |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45163940 aagactttctacaagatgtaaaatgat---tgatatccttgattcaacgtcatccacctgttccactaagcatcgagaaaataaaagacaagttattcaa 45163844  T
Q  434 tataaccaacacaatctctagccatgcataaattgcatacaatgaagataataagcccacaaagaacaaaacatgtgaagatttttggc 522  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45163843 tataaccaacacaatccctagccatgcataaattgcatacaatgaagataataagcccacaaagaacaaaacatgtgaagatttttggc 45163755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 24948543 - 24948643
Alignment:
Q  234 cagtcacatcgattaatatcatttaattttatttccatttaaatttttctatgctttgtgagtgtgcccaaatcattttgatatggggttgtgctcatct 333  Q
    |||||||||| ||||||||||||||||||||||  ||||||| ||||| |||| |||||||||||| ||||||||||||||| |||||||||| ||||||    
T  24948543 cagtcacatcaattaatatcatttaattttattctcatttaatttttt-tatgttttgtgagtgtgtccaaatcattttgatttggggttgtgttcatct 24948641  T
Q  334 aa 335  Q
    ||    
T  24948642 aa 24948643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 30473921 - 30473881
Alignment:
Q  135 tatatgacctgtgcggcagtacgggtgaaaagtctagttgt 175  Q
    ||||||||| ||||||||| ||||||| |||||||||||||    
T  30473921 tatatgacccgtgcggcagcacgggtggaaagtctagttgt 30473881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 27 - 173
Target Start/End: Original strand, 26724028 - 26724174
Alignment:
Q  27 tactaacaacattctcttaaattattgttgtctttaaagttacgacattttaatattgagttgcgaccgtgttatataattttgcctttgtctattgttt 126  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||||| ||||||||||||||    
T  26724028 tactaacaacattctcttaatttattgttgtctttaaagttacaacattttaatattgagttgcgactgtgcgatataattttgcttttgtctattgttt 26724127  T
Q  127 ttgcattatatatgacctgtgcggcagtacgggtgaaaagtctagtt 173  Q
    ||||||| ||||| ||| ||||||||| |||||||||||||||||||    
T  26724128 ttgcattgtatataacccgtgcggcagcacgggtgaaaagtctagtt 26724174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 235 - 344
Target Start/End: Original strand, 40835481 - 40835590
Alignment:
Q  235 agtcacatcgattaatatcatttaattttatttccatttaaatttttctatgctttgtgagtgtgcccaaatcattttgatatggggttgtgctcatcta 334  Q
    ||||||||| | ||||||||||||||||||||  | |||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||    
T  40835481 agtcacatcaactaatatcatttaattttattctcgtttaaatttttctatgttttgtgagtgtgtccaaatcattttgatttggggttgtgctcatcta 40835580  T
Q  335 agattatctc 344  Q
    ||||| ||||    
T  40835581 agattttctc 40835590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 237 - 337
Target Start/End: Original strand, 29888744 - 29888843
Alignment:
Q  237 tcacatcgattaatatcatttaattttatttccatttaaatttttctatgctttgtgagtgtgcccaaatcattttgatatggggttgtgctcatctaag 336  Q
    ||||||| ||||||||||||||||||||||  |||||||| ||||||||| ||||| ||| ||||||||||||||||||  |||||||||| | ||||||    
T  29888744 tcacatcaattaatatcatttaattttattctcatttaaa-ttttctatgttttgttagtatgcccaaatcattttgattcggggttgtgcccgtctaag 29888842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 237 - 317
Target Start/End: Original strand, 40608233 - 40608313
Alignment:
Q  237 tcacatcgattaatatcatttaattttatttccatttaaatttttctatgctttgtgagtgtgcccaaatcattttgatat 317  Q
    ||||||| |||||||||||||||||||||||  ||| ||||||||| ||| ||||||||||| ||||||||||||||||||    
T  40608233 tcacatcaattaatatcatttaattttatttttattcaaatttttcaatgttttgtgagtgtacccaaatcattttgatat 40608313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 234 - 325
Target Start/End: Original strand, 11669628 - 11669718
Alignment:
Q  234 cagtcacatcgattaatatcatttaattttatttccatttaaatttttctatgctttgtgagtgtgcccaaatcattttgatatggggttgt 325  Q
    |||||| ||| |||||||||||||||||| |||  ||||||||||||| |||  ||||||||| |||||||||||||||||| | |||||||    
T  11669628 cagtcaaatcaattaatatcatttaattt-attctcatttaaatttttttatattttgtgagtatgcccaaatcattttgatttagggttgt 11669718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 27 - 173
Target Start/End: Complemental strand, 45115574 - 45115427
Alignment:
Q  27 tactaacaacattctcttaaattattgttgtctttaaagttac-gacattttaatattgagttgcgaccgtgttatataattttgcctttgtctattgtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  |||||||||||  |||||||||||||    
T  45115574 tactaacaacattctcttaaattattgttgtctttaaagttactgacattttaatattgagttgcgactgtgcgatataattttgtttttgtctattgtt 45115475  T
Q  126 tttgcattatatatgacctgtgcggcagtacgggtgaaaagtctagtt 173  Q
    |||||||| ||||||||||||||| ||  |||||||||||||||||||    
T  45115474 tttgcattgtatatgacctgtgcgacatcacgggtgaaaagtctagtt 45115427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 47383705 - 47383627
Alignment:
Q  234 cagtcacatcgattaatatcatttaattttatttccatttaaatttttctatgctttgtgagtgtgcccaaatcatttt 312  Q
    |||||||||| |||||||| |||||||||||||  |||||||| ||||||||| ||| |||||||| ||||| ||||||    
T  47383705 cagtcacatcaattaatattatttaattttattctcatttaaagttttctatgttttatgagtgtgtccaaaccatttt 47383627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 337
Target Start/End: Original strand, 19596520 - 19596612
Alignment:
Q  245 attaatatcatttaattttatt-tccatttaaatttttctatgctttgtgagtgtgcccaaatcattttgatatggggttgtgctcatctaaga 337  Q
    ||||||||||||||||||| || ||  ||| | |||||||||| |||||||||||| |||  |||||||||| || ||||||||||||||||||    
T  19596520 attaatatcatttaattttgttgtcgttttgagtttttctatg-tttgtgagtgtgtccatgtcattttgatttgcggttgtgctcatctaaga 19596612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 36465887 - 36465920
Alignment:
Q  135 tatatgacctgtgcggcagtacgggtgaaaagtc 168  Q
    ||||||||||||||||||| ||||||||||||||    
T  36465887 tatatgacctgtgcggcagcacgggtgaaaagtc 36465920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 27 - 172
Target Start/End: Original strand, 2988804 - 2988950
Alignment:
Q  27 tactaacaacattctcttaaattattgttgtctttaaagttac-gacattttaatattgagttgcgaccgtgttatataattttgcctttgtctattgtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  |||||||||||  |||||||||||||    
T  2988804 tactaacaacattctcttaaattattgttgtctttaaagttactgacattttaatattgagttgcgactgtgcgatataattttgtttttgtctattgtt 2988903  T
Q  126 tttgcattatatatgacctgtgcggcagtacgggtgaaaagtctagt 172  Q
    |||||||| |||||||||  |||||||| ||||||||||||||||||    
T  2988904 tttgcattgtatatgacccatgcggcagcacgggtgaaaagtctagt 2988950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 237 - 327
Target Start/End: Complemental strand, 13567789 - 13567699
Alignment:
Q  237 tcacatcgattaatatcatttaattttatttccatttaaatttttctatgctttgtgagtgtgcccaaatcattttgatatggggttgtgc 327  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||| ||| ||||||||| |||||||||||||||||| ||| |||||||    
T  13567789 tcacatcgattaatatcattttattttattttcatttaaatttttccatgttttgtgagtatgcccaaatcattttgatttggagttgtgc 13567699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 14438990 - 14438927
Alignment:
Q  276 atttttctatgctttgtgagtgtgcccaaatcattttgatatggggttgtgctcatctaagatt 339  Q
    |||||| |||| ||||| ||||||||||||||||||| || | ||||| |||||||| ||||||    
T  14438990 atttttttatgttttgtaagtgtgcccaaatcattttaatttagggttatgctcatcaaagatt 14438927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 365 - 473
Target Start/End: Original strand, 24124347 - 24124455
Alignment:
Q  365 gatatccttgattcaacgtcatccacctgttccactaagcatcgagaaaataaaagataagttattcaatataaccaacacaatctctagccatgcataa 464  Q
    ||||||||||||||||| ||||||||||||| || |||| || |||||||||||||| |  |||||||||||||||||||| |||  |||||||||||||    
T  24124347 gatatccttgattcaacatcatccacctgtttcaataagtattgagaaaataaaagaaagattattcaatataaccaacaccatccgtagccatgcataa 24124446  T
Q  465 attgcatac 473  Q
    |||||||||    
T  24124447 attgcatac 24124455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 15044914 - 15044951
Alignment:
Q  135 tatatgacctgtgcggcagtacgggtgaaaagtctagt 172  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  15044914 tatatgacctgtgcggcagcacgggtggaaagtctagt 15044951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 238 - 332
Target Start/End: Complemental strand, 38257012 - 38256918
Alignment:
Q  238 cacatcgattaatatcatttaattttatttccatttaaatttttctatgctttgtgagtgtgcccaaatcattttgatatggggttgtgctcatc 332  Q
    |||||| ||||||||||||||||||||||  |||||||||||||||||| |||||||||||||| ||||||||||||| |||||| |||| ||||    
T  38257012 cacatcaattaatatcatttaattttattctcatttaaatttttctatgttttgtgagtgtgcctaaatcattttgatttggggtcgtgcccatc 38256918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 249 - 333
Target Start/End: Original strand, 1054225 - 1054309
Alignment:
Q  249 atatcatttaattttatttccatttaaatttttctatgctttgtgagtgtgcccaaatcattttgatatggggttgtgctcatct 333  Q
    |||||| ||||||||||||  |||||||||||||||||  ||||||||||||||||||||||||||| | ||||||||| |||||    
T  1054225 atatcaattaattttatttttatttaaatttttctatgtcttgtgagtgtgcccaaatcattttgatttagggttgtgcccatct 1054309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 234 - 337
Target Start/End: Complemental strand, 14536232 - 14536129
Alignment:
Q  234 cagtcacatcgattaatatcatttaattttatttccatttaaatttttctatgctttgtgagtgtgcccaaatcattttgatatggggttgtgctcatct 333  Q
    ||||| |||| ||| |||||| ||||||||| |   |||||| ||||| |||| ||||||||||||| ||||||||||||||  |||||||||| |||||    
T  14536232 cagtcgcatcaattgatatcaattaattttactcttatttaattttttttatgttttgtgagtgtgctcaaatcattttgattcggggttgtgcccatct 14536133  T
Q  334 aaga 337  Q
    ||||    
T  14536132 aaga 14536129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 215665 - 215600
Alignment:
Q  234 cagtcacatcgattaatatcatttaattttatttccatttaaatttttctatgctttgtgagtgtg 299  Q
    |||||||||| ||||||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  215665 cagtcacatcaattaatatcatttaattttattctcatttaaatttttctatgttttgtgagtgtg 215600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 5189854 - 5189787
Alignment:
Q  105 attttgcctttgtctattgtttttgcattatatatgacctgtgcggcagtacgggtgaaaagtctagt 172  Q
    ||||||| |||||||| | ||||| ||||||||||||||  ||||| || ||||||| ||||||||||    
T  5189854 attttgcttttgtctactatttttacattatatatgacccttgcggtagcacgggtgtaaagtctagt 5189787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 49506386 - 49506348
Alignment:
Q  135 tatatgacctgtgcggcagtacgggtgaaaagtctagtt 173  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  49506386 tatatgacccgtgcggcagtacgggtggaaagtctagtt 49506348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 12264392 - 12264432
Alignment:
Q  135 tatatgacctgtgcggcagtacgggtgaaaagtctagttgt 175  Q
    ||||||||| ||||||||| ||||||| |||||||||||||    
T  12264392 tatatgacccgtgcggcagcacgggtggaaagtctagttgt 12264432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 42987797 - 42987724
Alignment:
Q  234 cagtcacatcgattaatatcatttaattttatttccatttaaatttttctatgctttgtgagtgtgcccaaatca 308  Q
    |||||||||| ||||| |||||||||||| |||| |||||||||||||||||| ||||||||||||| |||||||    
T  42987797 cagtcacatcaattaagatcatttaattt-attttcatttaaatttttctatgttttgtgagtgtgctcaaatca 42987724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 17298637 - 17298587
Alignment:
Q  276 atttttctatgctttgtgagtgtgcccaaatcattttgatatggggttgtg 326  Q
    |||||| |||| ||||||||||||||||||| |||||||| ||||||||||    
T  17298637 atttttttatgttttgtgagtgtgcccaaattattttgatttggggttgtg 17298587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 6204098 - 6204050
Alignment:
Q  277 tttttctatgctttgtgagtgtgcccaaatcattttgatatggggttgt 325  Q
    |||||||||| |||||||||||| | ||||||||||||| |||||||||    
T  6204098 tttttctatgttttgtgagtgtgtctaaatcattttgatttggggttgt 6204050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 19777820 - 19777875
Alignment:
Q  260 ttttatttccatttaaatttttctatgctttgtgagtgtgcccaaatcattttgat 315  Q
    |||||||  |||||||||||||||||| ||| |||||| ||| |||||||||||||    
T  19777820 ttttattctcatttaaatttttctatgttttttgagtgagcctaaatcattttgat 19777875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 21670173 - 21670210
Alignment:
Q  135 tatatgacctgtgcggcagtacgggtgaaaagtctagt 172  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  21670173 tatatgacctgtgcggcagcacgggtggaaagtctagt 21670210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 27138565 - 27138528
Alignment:
Q  135 tatatgacctgtgcggcagtacgggtgaaaagtctagt 172  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  27138565 tatatgacctgtgcggcagcacgggtggaaagtctagt 27138528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 27903456 - 27903416
Alignment:
Q  133 tatatatgacctgtgcggcagtacgggtgaaaagtctagtt 173  Q
    ||||||||||| ||||||||| ||||||| |||||||||||    
T  27903456 tatatatgacccgtgcggcagcacgggtggaaagtctagtt 27903416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 547
Target Start/End: Original strand, 10346 - 10378
Alignment:
Q  515 tttttggcttaattgcagttttggcctcctatg 547  Q
    ||||||||||||| |||||||||||||||||||    
T  10346 tttttggcttaatagcagttttggcctcctatg 10378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University