View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19289_low_15 (Length: 514)

Name: NF19289_low_15
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19289_low_15
NF19289_low_15
[»] chr1 (14 HSPs)
chr1 (258-508)||(9210177-9210428)
chr1 (13-189)||(9209998-9210181)
chr1 (162-233)||(6710822-6710893)
chr1 (122-233)||(37624563-37624674)
chr1 (162-246)||(6709667-6709751)
chr1 (122-233)||(30551582-30551693)
chr1 (88-143)||(51217720-51217775)
chr1 (122-222)||(23082119-23082219)
chr1 (122-233)||(9415636-9415747)
chr1 (81-175)||(49292560-49292654)
chr1 (173-246)||(16907975-16908048)
chr1 (122-233)||(22766813-22766925)
chr1 (88-132)||(26055010-26055054)
chr1 (35-203)||(36511239-36511405)
[»] scaffold1550 (1 HSPs)
scaffold1550 (13-246)||(155-389)
[»] scaffold0012 (2 HSPs)
scaffold0012 (162-253)||(243621-243712)
scaffold0012 (162-246)||(242443-242527)
[»] chr4 (8 HSPs)
chr4 (81-203)||(6139039-6139161)
chr4 (170-251)||(47606641-47606722)
chr4 (88-146)||(43895576-43895634)
chr4 (81-146)||(43418132-43418197)
chr4 (88-131)||(2292264-2292307)
chr4 (124-203)||(29833414-29833493)
chr4 (121-203)||(53400227-53400309)
chr4 (164-204)||(53758017-53758057)
[»] chr3 (15 HSPs)
chr3 (164-232)||(29821330-29821398)
chr3 (88-183)||(7921602-7921697)
chr3 (72-233)||(26797331-26797492)
chr3 (162-231)||(33149496-33149565)
chr3 (164-232)||(29822790-29822858)
chr3 (122-233)||(34902987-34903097)
chr3 (88-203)||(11220617-11220732)
chr3 (88-183)||(32980411-32980506)
chr3 (88-146)||(8372575-8372633)
chr3 (162-234)||(9776867-9776939)
chr3 (81-140)||(53809445-53809504)
chr3 (88-202)||(43345362-43345476)
chr3 (162-203)||(383004-383045)
chr3 (88-145)||(17345410-17345467)
chr3 (81-130)||(45422117-45422166)
[»] chr2 (14 HSPs)
chr2 (89-188)||(8538584-8538683)
chr2 (88-203)||(42596602-42596717)
chr2 (88-156)||(23178841-23178909)
chr2 (88-156)||(23590098-23590166)
chr2 (122-233)||(41296447-41296558)
chr2 (164-207)||(18342777-18342820)
chr2 (72-133)||(4830618-4830679)
chr2 (164-232)||(18343925-18343993)
chr2 (160-203)||(15269123-15269166)
chr2 (35-146)||(40174672-40174781)
chr2 (88-146)||(6707025-6707083)
chr2 (108-232)||(36422700-36422825)
chr2 (88-145)||(26206006-26206063)
chr2 (121-201)||(41295149-41295229)
[»] chr5 (8 HSPs)
chr5 (78-146)||(5384295-5384363)
chr5 (88-160)||(15857577-15857649)
chr5 (91-200)||(32735441-32735550)
chr5 (162-206)||(11431498-11431542)
chr5 (169-232)||(14210156-14210219)
chr5 (88-146)||(1273188-1273246)
chr5 (81-142)||(18695599-18695660)
chr5 (162-222)||(36207092-36207152)
[»] chr8 (6 HSPs)
chr8 (90-232)||(16362431-16362574)
chr8 (72-188)||(8397201-8397317)
chr8 (88-145)||(13514824-13514881)
chr8 (88-145)||(13604357-13604414)
chr8 (88-157)||(34616222-34616291)
chr8 (88-232)||(40251315-40251459)
[»] chr6 (9 HSPs)
chr6 (164-211)||(4030181-4030228)
chr6 (164-222)||(9097105-9097163)
chr6 (164-232)||(4030898-4030965)
chr6 (164-232)||(24547100-24547168)
chr6 (164-211)||(28928389-28928436)
chr6 (164-231)||(28931149-28931216)
chr6 (81-133)||(18242259-18242311)
chr6 (162-218)||(25439140-25439196)
chr6 (108-219)||(31740251-31740363)
[»] chr7 (5 HSPs)
chr7 (88-232)||(43111442-43111585)
chr7 (162-203)||(1884282-1884323)
chr7 (162-231)||(47535673-47535742)
chr7 (88-132)||(25532257-25532301)
chr7 (484-512)||(47138560-47138588)
[»] scaffold0046 (1 HSPs)
scaffold0046 (108-203)||(24794-24889)
[»] scaffold0290 (1 HSPs)
scaffold0290 (88-146)||(8478-8536)
[»] scaffold0084 (1 HSPs)
scaffold0084 (88-146)||(11805-11863)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 258 - 508
Target Start/End: Original strand, 9210177 - 9210428
Alignment:
Q  258 ttttagtcagaccagaattttaggaaggccatgttaggtttgaaaggaagcctttgacagactagtaggcctgacttagactttannnnnnn-caactaa 356  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||    
T  9210177 ttttagtcagaccagaattttagaaaggccatgttaggtttgaaaggaagcctttgacagactagtaggcctgacttagactttattttttttcaactaa 9210276  T
Q  357 gtctaacctatttaagcaaggtctctttcaacatagtctatttccatccctaaaagcaacaaccccaaaggggaaaataaaacaatgcaacaaagtacat 456  Q
    |||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  9210277 gtctaacctatttaagcaaggtctgtttcgacatagtatatttccatccctaaaagcaacaacctcaaaggggaaaataaaacaatgcaacaaagtatat 9210376  T
Q  457 gaccacattactcaatctgaagtaaatcaaaagaggaagaggaagaggaaga 508  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  9210377 gaccacattactcaatctgaagtaaatcaaaagaggaagatgaagatgaaga 9210428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 9209998 - 9210181
Alignment:
Q  13 aatatgaaggaagaagatgaagaaaaa--------attaggtgtttggggttcaccgttacaataagatggtcctacaatcatatggttgaaattatatc 104  Q
    |||||||||||||||||||||||||||        |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  9209998 aatatgaaggaagaagatgaagaaaaacaaaaaaaattaggtgtttgtggttcaccgttaca-taagatggtcctacaatcaaatggttgaaattatatc 9210096  T
Q  105 aagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgtttta 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9210097 aagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaagaaccaaattgagacgtttta 9210181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 6710822 - 6710893
Alignment:
Q  162 agataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaatataagggact 233  Q
    |||||| ||| ||||||||||||||||| | ||||||||||||||||||| |||||||||| ||||||||||    
T  6710822 agataagggatcaaattgagacgttttagagttatgggaccattttgaaaaaaaaaattaagataagggact 6710893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 37624563 - 37624674
Alignment:
Q  122 aaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaatta 221  Q
    |||||||||||| || ||||||||   | ||||||| || | |||| |||||||||||| ||||||| || ||| ||||||||||||||| ||| |||||    
T  37624563 aaaaactaacggagaggaccaaaagatgtaacgacagaaaacataacggaccaaattgaaacgttttttagttaagggaccattttgaaaaaaataatta 37624662  T
Q  222 atataagggact 233  Q
    |  |||||||||    
T  37624663 aattaagggact 37624674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 6709751 - 6709667
Alignment:
Q  162 agataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaatataagggactgatggttcaatta 246  Q
    |||||| ||||||||||||||||||||| | |||| |||||||||| ||| ||| ||||||  ||||||||| | || |||||||    
T  6709751 agataagggaccaaattgagacgttttagagttataggaccattttaaaaaaaagaattaagttaagggactaagggatcaatta 6709667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 30551582 - 30551693
Alignment:
Q  122 aaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaatta 221  Q
    |||||||||||| |||||||||||   | ||||| | || | |||| |||||||||||| | ||||| || ||| ||||||||||||||| ||| |||||    
T  30551582 aaaaactaacggagatgaccaaaagaggtaacgatagaaaacataagggaccaaattgaaatgttttttagttaagggaccattttgaaaaaaagaatta 30551681  T
Q  222 atataagggact 233  Q
    |  |||||||||    
T  30551682 aattaagggact 30551693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 51217775 - 51217720
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaa 143  Q
    ||||||||||||||||||| ||||| || ||||||||||||||||| || ||||||    
T  51217775 atggttgaaattatatcaaaaatattagtcattaaaaaactaacggagaggaccaa 51217720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 23082119 - 23082219
Alignment:
Q  122 aaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaatta 221  Q
    ||||||||||||  | ||||||||   | ||||||| || | |||| |||||||||||| ||||||| || ||| ||||||||||||||| ||| |||||    
T  23082119 aaaaactaacggaaaggaccaaaagaggcaacgacagaaaatataagggaccaaattgaaacgttttttagttaagggaccattttgaaaaaaagaatta 23082218  T
Q  222 a 222  Q
    |    
T  23082219 a 23082219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 9415747 - 9415636
Alignment:
Q  122 aaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaatta 221  Q
    |||||||||||  |  |||||||||  | |||| ||||||| |||| ||||||| || ||||||||| || ||| ||||||||| ||||| ||| |||||    
T  9415747 aaaaactaacgaagtggaccaaaataggtaacggcataatacataagggaccaatttaagacgttttttagttaagggaccattatgaaaaaaagaatta 9415648  T
Q  222 atataagggact 233  Q
    |  |||||||||    
T  9415647 agttaagggact 9415636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 49292654 - 49292560
Alignment:
Q  81 caatcatatggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaa 175  Q
    |||||| ||||||||||  ||||||||||||| ||||| ||||| |||||||| |  ||| || ||||  |||||||   |||||||||||||||    
T  49292654 caatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggacaaatatgatcaacgacaacttagataaaggaccaa 49292560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 16907975 - 16908048
Alignment:
Q  173 caaattgagacgttttataattatgggaccattttgaaacaaaaaattaatataagggactgatggttcaatta 246  Q
    ||||||||||||||||||| ||||| || || || |||||||| ||||||  |||||||  | |||||||||||    
T  16907975 caaattgagacgttttatagttatgagatcacttcgaaacaaagaattaagttaagggatcggtggttcaatta 16908048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 22766813 - 22766925
Alignment:
Q  122 aaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaa-aatt 220  Q
    ||||||||||||  | ||||||||   | ||||||| || | |||| ||| |||||||| ||||||| || ||| ||||||||||||||| |||| ||||    
T  22766813 aaaaactaacggaaaggaccaaaagaggcaacgacagaaaacataagggatcaaattgaaacgttttttagttaagggaccattttgaaaaaaaagaatt 22766912  T
Q  221 aatataagggact 233  Q
    ||  |||||||||    
T  22766913 aaattaagggact 22766925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 26055054 - 26055010
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacg 132  Q
    ||||||||||||||||||  |||||  ||||||||||||||||||    
T  26055054 atggttgaaattatatcataaatatttgacattaaaaaactaacg 26055010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 36511239 - 36511405
Alignment:
Q  35 aaaaaattaggtgtttggggttcaccgttacaataagatggtcctacaatcatatggttgaaattatatcaagaatataagacattaaaaaactaacggc 134  Q
    |||||||| |||||| | |||||||||||||| ||  |||||| | |||||  |||| |||||| ||||    ||||| | |||||| |||||||||||     
T  36511239 aaaaaatt-ggtgttggtggttcaccgttaca-tacaatggtcattcaatctaatggctgaaatcatatttgaaatattatacattagaaaactaacgga 36511336  T
Q  135 gatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgttttataattatgggacca 203  Q
    ||||||||||||   |||||||| || |  ||  |||||||||||||||  |||||| ||| |||||||    
T  36511337 gatgaccaaaatagtaaacgacagaagatttatgggaccaaattgagacactttatagttaagggacca 36511405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1550 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold1550
Description:

Target: scaffold1550; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 389 - 155
Alignment:
Q  13 aatatgaaggaagaagatgaagaaaaaa---ttaggtgtttggggttcaccgttacaataagatggtcctacaatcatatggttgaaattatatcaagaa 109  Q
    ||||||||||||||||||||||||||||   |||| |||| | | ||||| |||||| ||  |||| ||| |||||| |||| |||||| |||||| |||    
T  389 aatatgaaggaagaagatgaagaaaaaaaaattagatgttggtgattcacggttaca-tacaatggacctgcaatcaaatggctgaaatcatatcacgaa 291  T
Q  110 tataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgttttataattatgggaccattttga 209  Q
    ||  | |||||||||  |||||||||   || |||||||  ||||  | ||||||||| ||||||||||||||||||||||| ||||| ||||| |||||    
T  290 tagtaaacattaaaat-ctaacggcgtgaactaaaatgattaacggaagaatagataagggaccaaattgagacgttttatagttatgagaccactttga 192  T
Q  210 aacaaaaaattaatataagggactgatggttcaatta 246  Q
    |||||| ||||||  |||||||| | |||||||||||    
T  191 aacaaagaattaaattaagggaccggtggttcaatta 155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 253
Target Start/End: Original strand, 243621 - 243712
Alignment:
Q  162 agataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaatataagggactgatggttcaattatgcctta 253  Q
    |||||| ||||||||||||||||||||| | ||||||||||||||| ||| ||| |||||| |||||||||| | || ||||||| ||||||    
T  243621 agataagggaccaaattgagacgttttagagttatgggaccattttaaaaaaaagaattaagataagggactaagggatcaattaagcctta 243712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 242527 - 242443
Alignment:
Q  162 agataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaatataagggactgatggttcaatta 246  Q
    |||||| ||||||||||||||||||||| | ||||| ||||||||||||| ||| ||||||  ||||||||| | || |||||||    
T  242527 agataagggaccaaattgagacgttttagagttatgagaccattttgaaaaaaagaattaaattaagggactaagggatcaatta 242443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 6139161 - 6139039
Alignment:
Q  81 caatcatatggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattga 180  Q
    |||||| | |||||||||||||| || ||||| ||||||||||| |||||| | |||||||||||| | |||| |||||| || ||   |||||||||||    
T  6139161 caatcaaacggttgaaattatataaaaaatattagacattaaaatactaacagagatgaccaaaataataaacaacataagagttatgagaccaaattga 6139062  T
Q  181 gacgttttataattatgggacca 203  Q
    ||| ||| ||||||| |||||||    
T  6139061 gacatttaataattaagggacca 6139039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 47606641 - 47606722
Alignment:
Q  170 gaccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaatataagggactgatggttcaattatgcct 251  Q
    |||||||||||||||||||| | |||||| |||||||||||| ||| ||||||  ||||||||| | || ||||||| ||||    
T  47606641 gaccaaattgagacgttttagagttatggaaccattttgaaaaaaagaattaagttaagggactaagggatcaattaagcct 47606722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 43895576 - 43895634
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaat 146  Q
    |||||| |||||| ||||| ||||| ||||||||||||| |||||| ||||||||||||    
T  43895576 atggttaaaattacatcaaaaatattagacattaaaaaattaacggagatgaccaaaat 43895634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 43418197 - 43418132
Alignment:
Q  81 caatcatatggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaat 146  Q
    |||||| ||||||||||| | ||||| ||||| ||||||||||| |||||||| ||||||| ||||    
T  43418197 caatcaaatggttgaaatcaaatcaaaaatattagacattaaaatactaacggagatgaccgaaat 43418132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 2292307 - 2292264
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaac 131  Q
    ||||||||||||||||||| ||||| || |||||||||||||||    
T  2292307 atggttgaaattatatcaaaaatattagtcattaaaaaactaac 2292264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 29833493 - 29833414
Alignment:
Q  124 aaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgttttataattatgggacca 203  Q
    |||||||||| || ||||||||   | ||||||| || | |||| ||||||||||||||| ||||||||||| |||||||    
T  29833493 aaactaacggagaggaccaaaagaggtaacgacaaaagatataagggaccaaattgagacattttataattaggggacca 29833414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 53400309 - 53400227
Alignment:
Q  121 aaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgttttataattatgggacca 203  Q
    ||||| ||||||| || ||| ||||||  ||||||||||| |  || ||||||||||||||||  |||||| |||||||||||    
T  53400309 aaaaatctaacggagaggactaaaatggtaaacgacataagatttataggaccaaattgagacactttatagttatgggacca 53400227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 53758017 - 53758057
Alignment:
Q  164 ataaaggaccaaattgagacgttttataattatgggaccat 204  Q
    |||| ||||||||||||||||||||| ||||||| ||||||    
T  53758017 ataagggaccaaattgagacgttttaaaattatgagaccat 53758057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 29821398 - 29821330
Alignment:
Q  164 ataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaatataagggac 232  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||||  ||||||||    
T  29821398 ataaaggaccaaattgagacgttttaaagttatgggaccattttgaaaaaaagaattaaattaagggac 29821330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 7921602 - 7921697
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagac 183  Q
    ||||||||||| ||||||| ||||| |||||||||||||||||||| || || ||||||  | ||||||| |||| |||| ||||||| |||||||    
T  7921602 atggttgaaatcatatcaaaaatattagacattaaaaaactaacggagaggatcaaaataggtaacgacacaatacataagggaccaatttgagac 7921697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 233
Target Start/End: Complemental strand, 26797492 - 26797331
Alignment:
Q  72 atggtcctacaatcatatggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaagga 171  Q
    |||| ||| |||||| ||||||||||||||||||| ||||| |  ||||| ||||||||||| || | |||| ||  | |||| ||||||| |||| | |    
T  26797492 atggacctgcaatcaaatggttgaaattatatcaaaaatattaatcattagaaaactaacggagagggccaagataggtaacggcataatacataaggaa 26797393  T
Q  172 ccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaatataagggact 233  Q
    |||| |||||||||||| || ||| | ||| ||| ||||| ||| || |||  |||||||||    
T  26797392 ccaatttgagacgttttttagttaggtgactattgtgaaaaaaagaaataagttaagggact 26797331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 33149565 - 33149496
Alignment:
Q  162 agataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaatataaggga 231  Q
    |||||| ||||||||||||||||||||| | ||||||||||||||| ||| ||| ||||||  |||||||    
T  33149565 agataatggaccaaattgagacgttttaaagttatgggaccattttaaaaaaaagaattaagttaaggga 33149496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 29822790 - 29822858
Alignment:
Q  164 ataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaatataagggac 232  Q
    |||| ||||||||||||||| ||||| ||||||||||||||| ||||| ||| ||||||  ||||||||    
T  29822790 ataagggaccaaattgagactttttaaaattatgggaccattctgaaaaaaagaattaaattaagggac 29822858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 34902987 - 34903097
Alignment:
Q  122 aaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacg-ttttataattatgggaccattttgaaacaaaaaatt 220  Q
    |||||||||||| ||||||||||| ||| ||||||| || | ||||  ||||||||||| ||| |||| || ||| ||||||||||||||| ||||||||    
T  34902987 aaaaactaacggagatgaccaaaa-gagtaacgacagaaaacataagagaccaaattgaaacgtttttttagttaagggaccattttgaaa-aaaaaatt 34903084  T
Q  221 aatataagggact 233  Q
    ||  |||||||||    
T  34903085 aaattaagggact 34903097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 11220617 - 11220732
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgttt 187  Q
    ||||||||||||||||||  |||||  ||||||||||||| ||||| |  |||||||||   |||||||| || |  || ||||||||||||||||  ||    
T  11220617 atggttgaaattatatcataaatatttgacattaaaaaacaaacggaggggaccaaaatagtaaacgacagaagatttataggaccaaattgagacactt 11220716  T
Q  188 tataattatgggacca 203  Q
    |||| ||| |||||||    
T  11220717 tatagttaggggacca 11220732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 32980411 - 32980506
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagac 183  Q
    ||||||||||| ||||||| ||| | ||| |||||||||||||||| ||||||||||||   ||||| || || |  || ||||||||||||||||    
T  32980411 atggttgaaatcatatcaaaaatgttagaaattaaaaaactaacggagatgaccaaaatagtaaacggcagaagatttataggaccaaattgagac 32980506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 8372575 - 8372633
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaat 146  Q
    ||||||||||| ||||||| ||||| | |||||||||||||||||| | ||||||||||    
T  8372575 atggttgaaatcatatcaaaaatattaaacattaaaaaactaacggaggtgaccaaaat 8372633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 9776939 - 9776867
Alignment:
Q  162 agataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaatataagggactg 234  Q
    |||||| ||||||||||||||||||||  | ||||| ||| ||||||||| ||| ||||||  ||||||||||    
T  9776939 agataagggaccaaattgagacgttttcaagttatgtgactattttgaaataaagaattaagttaagggactg 9776867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 53809445 - 53809504
Alignment:
Q  81 caatcatatggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgac 140  Q
    |||||| |||||| |||||||||||| ||  | |||||||||||||||||||| ||||||    
T  53809445 caatcaaatggttaaaattatatcaaaaaatttagacattaaaaaactaacggagatgac 53809504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 43345476 - 43345362
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgttt 187  Q
    ||||||| ||| ||||||| ||||| | |||||||||||||||||| ||  |||||||||  |||||| | || |  ||  |||||||||||| || |||    
T  43345476 atggttggaatcatatcaaaaatattaaacattaaaaaactaacggagaaaaccaaaatggtaaacgagagaagatttatgggaccaaattgaaacattt 43345377  T
Q  188 tataattatgggacc 202  Q
    |||| ||| ||||||    
T  43345376 tatagttaagggacc 43345362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 383004 - 383045
Alignment:
Q  162 agataaaggaccaaattgagacgttttataattatgggacca 203  Q
    |||||| |||||||||||||| |||||||| |||||||||||    
T  383004 agataagggaccaaattgagatgttttatagttatgggacca 383045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 17345467 - 17345410
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaa 145  Q
    |||||| |||| |||| || ||||| |||||||||||||||||||| || ||||||||    
T  17345467 atggttcaaatcatattaaaaatattagacattaaaaaactaacggagaggaccaaaa 17345410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 45422117 - 45422166
Alignment:
Q  81 caatcatatggttgaaattatatcaagaatataagacattaaaaaactaa 130  Q
    |||||| |||||| | || ||||||||||||| |||||||||||||||||    
T  45422117 caatcaaatggttaatatcatatcaagaatattagacattaaaaaactaa 45422166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 8538584 - 8538683
Alignment:
Q  89 tggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgtttt 188  Q
    |||||||||||||||||| ||||| || |||||||||| |||||| ||||||||||||  | ||||||  |||  |||| ||||||| ||||||||||||    
T  8538584 tggttgaaattatatcaaaaatattagtcattaaaaaattaacggagatgaccaaaataggtaacgacggaatgtataagggaccaatttgagacgtttt 8538683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 42596717 - 42596602
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgttt 187  Q
    ||||||||| ||||||||| | ||| |||||||||||||||||||  |||||  |||||  | ||| || ||||| ||| ||||||||||||||||||||    
T  42596717 atggttgaagttatatcaacattattagacattaaaaaactaacgaagatgattaaaatatgtaacaacgtaatatatagaggaccaaattgagacgttt 42596618  T
Q  188 tataattatgggacca 203  Q
     ||| ||| |||||||    
T  42596617 aatagttaggggacca 42596602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 23178841 - 23178909
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgac 156  Q
    ||||||||||||||||||  ||| | | |||||||||||||||||| |||||||||||| | |||||||    
T  23178841 atggttgaaattatatcagaaatgttacacattaaaaaactaacggagatgaccaaaataataaacgac 23178909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 23590098 - 23590166
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgac 156  Q
    ||||||||||||||||||  ||| | | |||||||||||||||||| |||||||||||| | |||||||    
T  23590098 atggttgaaattatatcagaaatgttacacattaaaaaactaacggagatgaccaaaataataaacgac 23590166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 41296447 - 41296558
Alignment:
Q  122 aaaaactaacggcgatgaccaaaatgaga-aacgacataatagataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaatt 220  Q
    |||||||||||| || |||||||| |||| ||||||| || | |||| |||||||||||| ||||||| || ||| ||||||||||| ||| ||| ||||    
T  41296447 aaaaactaacggagaggaccaaaa-gagataacgacaaaaaacataagggaccaaattgaaacgttttttagttaagggaccattttaaaaaaaagaatt 41296545  T
Q  221 aatataagggact 233  Q
    ||  |||||||||    
T  41296546 aaattaagggact 41296558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 18342820 - 18342777
Alignment:
Q  164 ataaaggaccaaattgagacgttttataattatgggaccatttt 207  Q
    |||||||||||||||||||||||||| | |||||||||||||||    
T  18342820 ataaaggaccaaattgagacgttttaaagttatgggaccatttt 18342777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 4830618 - 4830679
Alignment:
Q  72 atggtcctacaatcatatggttgaaattatatcaagaatataagacattaaaaaactaacgg 133  Q
    |||| |||||||||  ||||||||||| ||||||| ||||| ||||||| ||||||||||||    
T  4830618 atggacctacaatcgaatggttgaaatcatatcaaaaatattagacattcaaaaactaacgg 4830679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 18343925 - 18343993
Alignment:
Q  164 ataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaatataagggac 232  Q
    |||| ||||||||||||||||||||| |  ||| |||||||||||||| ||| ||||||  ||||||||    
T  18343925 ataagggaccaaattgagacgttttaaagctattggaccattttgaaaaaaagaattaagttaagggac 18343993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 15269123 - 15269166
Alignment:
Q  160 atagataaaggaccaaattgagacgttttataattatgggacca 203  Q
    |||||||| ||||||||||||||||||||||| |||| ||||||    
T  15269123 atagataagggaccaaattgagacgttttatagttattggacca 15269166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 40174672 - 40174781
Alignment:
Q  35 aaaaaattaggtgtttggggttcaccgttacaataagatggtcctacaatcatatggttgaaattatatcaagaatataagacattaaaaaactaacggc 134  Q
    |||||||||| |||| | ||| ||| |||| ||||  |||| ||| |||||  ||||||||||| |||| || ||||| | ||||||||||||||||||     
T  40174672 aaaaaattagatgttggcggtacactgtta-aatataatggacctgcaatcgaatggttgaaatcatataaaaaatatta-acattaaaaaactaacgga 40174769  T
Q  135 gatgaccaaaat 146  Q
    ||||||||||||    
T  40174770 gatgaccaaaat 40174781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 6707083 - 6707025
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaat 146  Q
    ||||||||||||||||||  |||||  ||||||||||||||||||| |  |||||||||    
T  6707083 atggttgaaattatatcataaatatttgacattaaaaaactaacggaggggaccaaaat 6707025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 36422700 - 36422825
Alignment:
Q  108 aatataagacattaaaaaactaacggcgatgaccaaaatgaga-aacgacataatagataaaggaccaaattgagacg-ttttataattatgggaccatt 205  Q
    ||||| |||||||||||||||| | | ||  |||||||| ||| |||||||||||| |||| ||||||| |||| ||| |||| || ||| |||||||||    
T  36422700 aatattagacattaaaaaactatctgagagtaccaaaat-agataacgacataatacataagggaccaatttgaaacgtttttttagttaagggaccatt 36422798  T
Q  206 ttgaaacaaaaaattaatataagggac 232  Q
     ||||| ||| ||||||  ||||||||    
T  36422799 gtgaaataaagaattaagttaagggac 36422825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 26206006 - 26206063
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaa 145  Q
    ||||||||||||||||  | ||||| || ||||||||||||||||| || ||||||||    
T  26206006 atggttgaaattatatataaaatattagtcattaaaaaactaacggagaggaccaaaa 26206063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 41295229 - 41295149
Alignment:
Q  121 aaaaaactaacggcgatgaccaaaatgaga-aacgacataatagataaaggaccaaattgagacgttttataattatgggac 201  Q
    ||||||||||| |||||||||||||| ||| ||||  | |||| |||| ||||||| |||||||||||| |||||| |||||    
T  41295229 aaaaaactaactgcgatgaccaaaat-agataacggtagaatatataagggaccaatttgagacgttttttaattaggggac 41295149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 5384295 - 5384363
Alignment:
Q  78 ctacaatcatatggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaat 146  Q
    ||||||||  ||||||||||||||||||| ||||| | |||||||||||||||||| || |||||||||    
T  5384295 ctacaatcgaatggttgaaattatatcaaaaatattaaacattaaaaaactaacggagaggaccaaaat 5384363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 15857577 - 15857649
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataa 160  Q
    ||||||| ||| ||||||| ||||| | |||||||||||||||||| |||||||||||||  |||||||||||    
T  15857577 atggttggaatcatatcaaaaatattaaacattaaaaaactaacggagatgaccaaaatggtaaacgacataa 15857649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 200
Target Start/End: Original strand, 32735441 - 32735550
Alignment:
Q  91 gttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgttttat 190  Q
    ||||||||||||| || ||||| ||||||||||| |||||| | |||||||||||| | ||||| || || || ||  |||||||||| | || ||| ||    
T  32735441 gttgaaattatataaaaaatattagacattaaaatactaacagagatgaccaaaataataaacggcagaagagttatgggaccaaattaaaacatttaat 32735540  T
Q  191 aattatggga 200  Q
    ||||| ||||    
T  32735541 aattaaggga 32735550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 11431498 - 11431542
Alignment:
Q  162 agataaaggaccaaattgagacgttttataattatgggaccattt 206  Q
    |||||||||||||||||| ||||||||||| |||||| |||||||    
T  11431498 agataaaggaccaaattgtgacgttttatagttatggaaccattt 11431542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 14210219 - 14210156
Alignment:
Q  169 ggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaatataagggac 232  Q
    ||||||| |||||||||||| || ||||||||||||| ||||| ||| ||||||  ||||||||    
T  14210219 ggaccaatttgagacgttttttagttatgggaccattgtgaaaaaaagaattaagttaagggac 14210156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 1273246 - 1273188
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaat 146  Q
    ||||||||||| ||||||| ||||| | |||||||||||||||||| |  |||||||||    
T  1273246 atggttgaaatcatatcaaaaatattaaacattaaaaaactaacggaggggaccaaaat 1273188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 18695599 - 18695660
Alignment:
Q  81 caatcatatggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgacca 142  Q
    |||||| | ||||||||  ||||||| ||| | |||||||||||||||||||| ||||||||    
T  18695599 caatcaaacggttgaaaacatatcaaaaattttagacattaaaaaactaacggagatgacca 18695660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 36207092 - 36207152
Alignment:
Q  162 agataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaa 222  Q
    ||||||||||||||||||| || |||||||||||   ||||||||| ||| ||| ||||||    
T  36207092 agataaaggaccaaattgaaacattttataattaaatgaccattttaaaaaaaagaattaa 36207152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 16362574 - 16362431
Alignment:
Q  90 ggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgtttta 189  Q
    ||||||||| ||||||| ||||| |||||||||||||||||||| || ||||||||   | ||||    || | ||||  ||||||||||| ||||||||    
T  16362574 ggttgaaatcatatcaaaaatattagacattaaaaaactaacggagaggaccaaaagatgtaacggtggaagatataagagaccaaattgaaacgtttta 16362475  T
Q  190 taattatgggaccattttgaaacaaaa-aattaatataagggac 232  Q
    || ||| || |||||||||||| |||| ||||||  ||||||||    
T  16362474 tagttaaggtaccattttgaaaaaaaagaattaagttaagggac 16362431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 8397201 - 8397317
Alignment:
Q  72 atggtcctacaatcatatggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgaga-aacgacataatagataaagg 170  Q
    |||| ||| |||||| ||||||||||||||||||| ||||| |  ||||| ||||||||||| ||||||||| || ||| || | ||||||| |||| ||    
T  8397201 atggacctgcaatcaaatggttgaaattatatcaaaaatattaatcattataaaactaacggagatgaccaagat-agataatggcataatacataatgg 8397299  T
Q  171 accaaattgagacgtttt 188  Q
    || || ||||||||||||    
T  8397300 actaatttgagacgtttt 8397317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 13514824 - 13514881
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaa 145  Q
    |||||| |||||||||||| || || || ||||||||||||||||| |||||||||||    
T  13514824 atggtttaaattatatcaaaaacattagtcattaaaaaactaacggagatgaccaaaa 13514881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 13604357 - 13604414
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaa 145  Q
    |||||| |||||||||||| || || || ||||||||||||||||| |||||||||||    
T  13604357 atggtttaaattatatcaaaaacattagtcattaaaaaactaacggagatgaccaaaa 13604414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 34616291 - 34616222
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgaca 157  Q
    ||||||||||| |||| || ||||| | ||||||||||||||||||  ||||||||||||  ||||||||    
T  34616291 atggttgaaatcatattaaaaatattaaacattaaaaaactaacggaaatgaccaaaatggtaaacgaca 34616222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 232
Target Start/End: Original strand, 40251315 - 40251459
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgttt 187  Q
    ||||||||||| ||||||| ||||| ||||||||||||| |||  | || |||||||||  | ||| | |||||| |||| |||  |  |||||||||||    
T  40251315 atggttgaaatcatatcaaaaatattagacattaaaaaattaattgagaggaccaaaatacgtaacaatataatacataagggatgagtttgagacgttt 40251414  T
Q  188 tataattatgggaccattttgaaacaaaaaattaatataagggac 232  Q
    | || |||| ||| |||| ||||| ||| ||||||  ||||||||    
T  40251415 tttacttataggatcattatgaaaaaaataattaaattaagggac 40251459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 4030228 - 4030181
Alignment:
Q  164 ataaaggaccaaattgagacgttttataattatgggaccattttgaaa 211  Q
    ||||| |||||||||||||||||||| | |||||||||||||||||||    
T  4030228 ataaatgaccaaattgagacgttttaaagttatgggaccattttgaaa 4030181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 9097163 - 9097105
Alignment:
Q  164 ataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaa 222  Q
    ||||||||||||||| |||||||||||| ||| ||||||| ||||||| ||| ||||||    
T  9097163 ataaaggaccaaatttagacgttttatagttaggggaccactttgaaataaagaattaa 9097105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 4030898 - 4030965
Alignment:
Q  164 ataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaatataagggac 232  Q
    |||| ||||||||||||||||||||| | ||||| ||||||||||||| ||| ||||||  ||||||||    
T  4030898 ataagggaccaaattgagacgttttaaagttatgagaccattttgaaa-aaagaattaaattaagggac 4030965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 24547100 - 24547168
Alignment:
Q  164 ataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaatataagggac 232  Q
    |||| ||| ||||||||||||||||| | ||||| ||||||||||||| ||| ||||||  ||||||||    
T  24547100 ataagggatcaaattgagacgttttaaagttatgagaccattttgaaaaaaagaattaagttaagggac 24547168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 28928436 - 28928389
Alignment:
Q  164 ataaaggaccaaattgagacgttttataattatgggaccattttgaaa 211  Q
    |||| ||||||||||||||||||||| | |||| ||||||||||||||    
T  28928436 ataagggaccaaattgagacgttttaaagttataggaccattttgaaa 28928389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 28931149 - 28931216
Alignment:
Q  164 ataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaatataaggga 231  Q
    |||| ||||||||||||||||||||| | |||| ||||||| |||||| ||| ||||||  |||||||    
T  28931149 ataagggaccaaattgagacgttttaaagttataggaccatattgaaaaaaagaattaagttaaggga 28931216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 18242259 - 18242311
Alignment:
Q  81 caatcatatggttgaaattatatcaagaatataagacattaaaaaactaacgg 133  Q
    |||||| |||||| |||||| || || ||| ||||||||||||||||||||||    
T  18242259 caatcaaatggttaaaattaaattaaaaatttaagacattaaaaaactaacgg 18242311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 25439140 - 25439196
Alignment:
Q  162 agataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaa 218  Q
    ||||||| ||||||||||| ||||||||||||||  |||||| ||| ||| ||||||    
T  25439140 agataaaagaccaaattgaaacgttttataattaaaggaccaatttaaaaaaaaaaa 25439196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 219
Target Start/End: Original strand, 31740251 - 31740363
Alignment:
Q  108 aatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgttttataattatgggaccatttt 207  Q
    ||||| |||||||||||||| |||||  | ||||||||||  ||||| ||||| |  ||  |||||||||||||||  |||||| ||| |||||||  ||    
T  31740251 aatattagacattaaaaaacaaacggataggaccaaaatggtaaacggcataagatttatgggaccaaattgagacactttatagttaagggaccaaatt 31740350  T
Q  208 g-aaacaaaaaat 219  Q
    | |||||||||||    
T  31740351 gaaaacaaaaaat 31740363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 232
Target Start/End: Complemental strand, 43111585 - 43111442
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgttt 187  Q
    ||||||||||||||||||| ||||| || || ||| |||||||||| |||||| |||| | | ||||||| || | ||||  || ||| |||||||||||    
T  43111585 atggttgaaattatatcaaaaatattagtcaataataaactaacggagatgacaaaaaag-gtaacgacaaaagacataagtgatcaatttgagacgttt 43111487  T
Q  188 tataattatgggaccattttgaaacaaaaaattaatataagggac 232  Q
    | || ||| |||||||   ||||| ||| ||||||  ||||||||    
T  43111486 tttagttaggggaccacactgaaaaaaagaattaagttaagggac 43111442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 1884323 - 1884282
Alignment:
Q  162 agataaaggaccaaattgagacgttttataattatgggacca 203  Q
    |||||| ||||||||||||||| ||||||||||| |||||||    
T  1884323 agataagggaccaaattgagacattttataattaagggacca 1884282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 47535742 - 47535673
Alignment:
Q  162 agataaaggaccaaattgagacgttttataattatgggaccattttgaaacaaaaaattaatataaggga 231  Q
    ||||||||||||||||||| |||||| ||| ||| ||||| | ||||||| ||| ||||||  |||||||    
T  47535742 agataaaggaccaaattgaaacgtttaatagttaggggactaatttgaaaaaaagaattaaattaaggga 47535673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 25532301 - 25532257
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacg 132  Q
    ||||||||||| ||||||| ||||| | |||||||||||||||||    
T  25532301 atggttgaaatcatatcaaaaatattaaacattaaaaaactaacg 25532257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 484 - 512
Target Start/End: Original strand, 47138560 - 47138588
Alignment:
Q  484 caaaagaggaagaggaagaggaagagaaa 512  Q
    |||||||||||||||||||||||||||||    
T  47138560 caaaagaggaagaggaagaggaagagaaa 47138588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 24794 - 24889
Alignment:
Q  108 aatataagacattaaaaaactaacggcgatgaccaaaatgagaaacgacataatagataaaggaccaaattgagacgttttataattatgggacca 203  Q
    ||||| |||||||||||||||||||| ||||||||||||  | ||||    || | |||| |||||||||||| ||  |||||||||| |||||||    
T  24794 aatattagacattaaaaaactaacggagatgaccaaaataggtaacggaggaagacataagggaccaaattgaaacactttataattaggggacca 24889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 8536 - 8478
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaat 146  Q
    ||||||||||||||||||  ||| | | |||||||||||||||||| ||||||| ||||    
T  8536 atggttgaaattatatcagaaatgttacacattaaaaaactaacggagatgaccgaaat 8478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 11863 - 11805
Alignment:
Q  88 atggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgaccaaaat 146  Q
    |||||| |||| | ||||| ||||| |||||||||||||||||||| || |||||||||    
T  11863 atggttaaaatcacatcaaaaatattagacattaaaaaactaacggagaggaccaaaat 11805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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