View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_17 (Length: 483)
Name: NF19289_low_17
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 457
Target Start/End: Complemental strand, 42663573 - 42663122
Alignment:
| Q |
16 |
atcggcatcaaagagaatcaaacttaagactttgagaggagcacactnnnnnnn-tccgttcgtaaacctttgttttattttatcatccggctgaacttt |
114 |
Q |
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| T |
42663573 |
atcgacatcaaaaaaaatcaaacctaaaactttgagaggagcacactcacaaaaatccgtacttaaacctttgttttattttattatccggctgaacttt |
42663474 |
T |
|
| Q |
115 |
acattattgcagtttctcttcccatgacatctaaactggattttttcaattgttgttagtctaatgctcaaccttcttggacaaaagtgaggtggcaatt |
214 |
Q |
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| T |
42663473 |
acattattgcagtttctcttcccatgacatctaaactggactttttcaattgttgttagtctaatgctcaaccttcttggacaaaagtgaggtggcaatt |
42663374 |
T |
|
| Q |
215 |
agattctgattttaaatatgatggtaaagtcttcttagtttgtttcattggaccatgtatatttatgtcatagtggtattaatgattgtcacaacttact |
314 |
Q |
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| T |
42663373 |
agattctgattttaaatatgatagtaaagtcttcttagtttgtttcattggaccatgtatatttatgtcatagtggtattaatgattgtcacaacttact |
42663274 |
T |
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| Q |
315 |
gaacaatatattttatgtat-catatctgacattcttatctttgctattatg--------tgtgcattttatgcatctacgtaccaaatagaaatgagca |
405 |
Q |
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| T |
42663273 |
gaacaatatattttatgtatccatatctgacattcttatctttgccattatgcttagctttgtgcattttatgcatctacgtaccaaatagaaatgagca |
42663174 |
T |
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| Q |
406 |
taggattcttactgaaatagtgtacacatgaaaatgttatcctaaggtattt |
457 |
Q |
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| T |
42663173 |
taggattcttactgaaatagtgtacacatgaaaatgttatcctaaggtattt |
42663122 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 47541462 - 47541424
Alignment:
| Q |
24 |
caaagagaatcaaacttaagactttgagaggagcacact |
62 |
Q |
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| T |
47541462 |
caaagagaatcaaacttaaaaccttgagaggagcacact |
47541424 |
T |
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