View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_18 (Length: 465)
Name: NF19289_low_18
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Original strand, 29202330 - 29202760
Alignment:
| Q |
19 |
atggcttcttggagaaagcttccatctgctgcggagaaaaatcgtgtaggtcaagatgcagtaaaagatgaaaatgctgaaaactgggatactttgtcat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29202330 |
atggcttcttggagaaagcttccatctgctgcggagaaaaatcgtgtaggtcaagatgcagtaaaagatgaaaatgctgaaaactgggatactttgtcat |
29202429 |
T |
|
| Q |
119 |
gtcaccctgatcaacattcacagccgtcatctagaacgcggaggccttcttggggatattggggagatcagcaaaatctattacatgatgattcaatgat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29202430 |
gtcaccctgatcaacattcacagccgtcatctagaacgcggaggccttcttggggatattggggagatcagcaaaatctattacatgatgattcaatgat |
29202529 |
T |
|
| Q |
219 |
ctgcaggatttgtgaggttgaaataccaatattacatgtggaggagcattctcgaatatgtacaattgctgataaatgtgatttgaaaggcttaactgta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29202530 |
ctgcaggatttgtgaggttgaaataccaatattacatgtggaggagcattctcgaatatgtacaattgctgataaatgtgatttgaaaggcttaactgta |
29202629 |
T |
|
| Q |
319 |
aatgaacggcttgaaagagttgccgaaacaattgaaatgttacttgattccttgacaccaacatcaagtttgcatgaagagttcaatgagttatctctag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29202630 |
aatgaacggcttgaaagagttgccgaaacaattgaaatgttacttgattccttgacaccaacatcaagtttgcatgaagagttcaatgagttatctctag |
29202729 |
T |
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| Q |
419 |
aaagaaataacatgtcatctagatgctctga |
449 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
29202730 |
aaagaaataacatgtcatctagatgctctga |
29202760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Complemental strand, 12649557 - 12649127
Alignment:
| Q |
19 |
atggcttcttggagaaagcttccatctgctgcggagaaaaatcgtgtaggtcaagatgcagtaaaagatgaaaatgctgaaaactgggatactttgtcat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12649557 |
atggcttcttggagaaagcttccatctgctgcggagaaaaatcgtgtaggtcaagatgcagtaaaagatgaaaatgctgaaaactgggatactttgtcat |
12649458 |
T |
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| Q |
119 |
gtcaccctgatcaacattcacagccgtcatctagaacgcggaggccttcttggggatattggggagatcagcaaaatctattacatgatgattcaatgat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12649457 |
gtcaccctgatcaacattcacagccgtcatctagaacgcggaggccttcttggggatattggggagatcagcaaaatctattacatgatgattcaatgat |
12649358 |
T |
|
| Q |
219 |
ctgcaggatttgtgaggttgaaataccaatattacatgtggaggagcattctcgaatatgtacaattgctgataaatgtgatttgaaaggcttaactgta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12649357 |
ctgcaggatttgtgaggttgaaataccaatattacatgtggaggagcattctcgaatatgtacaattgctgataaatgtgatttgaaaggcttaattgta |
12649258 |
T |
|
| Q |
319 |
aatgaacggcttgaaagagttgccgaaacaattgaaatgttacttgattccttgacaccaacatcaagtttgcatgaagagttcaatgagttatctctag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12649257 |
aatgaacggcttgaaagagttgccgaaacaattgaaatgttacttgattccttgacaccaacatcaagtttgcatgaagagttcaatgagttatctctag |
12649158 |
T |
|
| Q |
419 |
aaagaaataacatgtcatctagatgctctga |
449 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
12649157 |
aaagaaataacatgtcatctagatgctctga |
12649127 |
T |
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