View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_20 (Length: 449)
Name: NF19289_low_20
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 21 - 429
Target Start/End: Original strand, 29292379 - 29292787
Alignment:
| Q |
21 |
agcacagagtgaaattatttcatatcacaagtttaatcaaattttgaatgatatctaccaagatcctatcaatatgatacaaaaatattattcttgaaca |
120 |
Q |
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| T |
29292379 |
agcatagagtgaaatcatttcatatcacaagtttaatcaaattttgaatgatatctaccaagatcctatctatatgatacaaaaatattattcgtgaaca |
29292478 |
T |
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| Q |
121 |
attgcaaaagtatctgtatgacttctaaaagtgtatattttaatttataatgctatgaaagcgcagttttaaccaattaaaggtttcataaaaatacatt |
220 |
Q |
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| T |
29292479 |
attgcaaaagtatctgtatgacttctaaaagtgtatattttaatttataatgctatgaaagcgcagttttaaccaattaaaggtttcataaaaatacatt |
29292578 |
T |
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| Q |
221 |
ctatatgatttgaaccaattaatccattgcattagagatagaaagtaattttgtaatatattcacatgttctttaattataatcctaaatacaaatgaaa |
320 |
Q |
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| T |
29292579 |
ctatatgatttgaaccaattaatccattgcattagagatagaaagtaatttcgtaatatattcacatgttctttaattataatcctaaatacaaaggaaa |
29292678 |
T |
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| Q |
321 |
atcttatctgtttcacatcataatcatatcaataatttttgtgattattctagaaattgtggcagtggacatatttaaactatcaggcagtgattgattc |
420 |
Q |
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| T |
29292679 |
atcttatctgtttcacatcataatcatatcaataatttttgtgattattctagaaattgtggcagtggacatatttaaactatcaggcagtgattgattc |
29292778 |
T |
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| Q |
421 |
atgagtact |
429 |
Q |
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| T |
29292779 |
atgagtact |
29292787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 29330442 - 29330484
Alignment:
| Q |
42 |
atatcacaagtttaatcaaattttgaatgatatctaccaagat |
84 |
Q |
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| T |
29330442 |
atatcacaaatttaaccaaattttgaatgatatataccaagat |
29330484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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