View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19289_low_24 (Length: 402)
Name: NF19289_low_24
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 1034775 - 1035173
Alignment:
| Q |
1 |
cttataacattctcagcaaattcatcaactttttgtatggatttcttaagctttctttccatacctaagttaagaaacctcatagccttccatacacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1034775 |
cttataacattctcagcaaattcatcaactttttgtatggatttcttaagctttctttccatacctaagttaagaaacctcatagctttccatacacaaa |
1034874 |
T |
|
| Q |
101 |
tcggcacgacaaatcgaaacaaaatagcttctgttgcatcctcaaaagctgctgcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1034875 |
tcggcacgacaaatcgaaacaaaatagcttctgttgcatcctcaaaagctcctgcaaagggaatttcaggcaaatgaggttgtaagcaaccaggatcaac |
1034974 |
T |
|
| Q |
201 |
accaaaagctatcatacaaacattatcaaaagttagcctcagcaaaatatcttgaagatctatggcaacatttttcttcaatgataattctaagactggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1034975 |
accaaaagctatcatacaaacattatcaaaagttagtctcagcaaaatatcttgaagatctatggcaacatttttcttcaatgataattctaagactggt |
1035074 |
T |
|
| Q |
301 |
atgagcctattgttcacaagctcaaaaattgactcaattgttaactttctaaaatttgtcgaatgaaactcgatactagctattttcctttgattctgc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1035075 |
atgagcctattgttcacaagctcaaaaattgactcatttgttaactttctaaaatttgtcgaatgaaactcgatactagctattttcctttgtttctgc |
1035173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 13897718 - 13898116
Alignment:
| Q |
1 |
cttataacattctcagcaaattcatcaactttttgtatggatttcttaagctttctttccatacctaagttaagaaacctcatagccttccatacacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13897718 |
cttataacattctcagcaaattcatcaactttttgtattgatttcttgagctttctttccatacctaagttaagaaacctcatagccttccatacacaaa |
13897817 |
T |
|
| Q |
101 |
tcggcacgacaaatcgaaacaaaatagcttctgttgcatcctcaaaagctgctgcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaac |
200 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13897818 |
ccggcatgacaaatcgaaacaaagtagcttctgttgcatcctcaaaagctgcagcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaac |
13897917 |
T |
|
| Q |
201 |
accaaaagctatcatacaaacattatcaaaagttagcctcagcaaaatatcttgaagatctatggcaacatttttcttcaatgataattctaagactggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
13897918 |
accaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatctattgcaacatttttcttcaatgatgattctaagacaggt |
13898017 |
T |
|
| Q |
301 |
atgagcctattgttcacaagctcaaaaattgactcaattgttaactttctaaaatttgtcgaatgaaactcgatactagctattttcctttgattctgc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
13898018 |
atgagcctattgttcacaagctcaaaaattgacttaattgttaacttcctaaaatttgtcgaatgaaactcgatactcgctattttcctttgtttctgc |
13898116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 13887486 - 13887088
Alignment:
| Q |
1 |
cttataacattctcagcaaattcatcaactttttgtatggatttcttaagctttctttccatacctaagttaagaaacctcatagccttccatacacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13887486 |
cttataacattctcagcaaattcatcaactttttgtattgattccttcaactttctctccatacctaagttaagaaacctcatagccttccatacacaaa |
13887387 |
T |
|
| Q |
101 |
tcggcacgacaaatcgaaacaaaatagcttctgttgcatcctcaaaagctgctgcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaac |
200 |
Q |
| |
|
||| |||||||||||| |||| | ||||| |||||||| ||||||||| |||||| || |||||||| |||||| |||| |||||| ||||||||| |
|
|
| T |
13887386 |
ctggcgcgacaaatcgaagcaaagttgcttcggttgcatcttcaaaagctcttgcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaac |
13887287 |
T |
|
| Q |
201 |
accaaaagctatcatacaaacattatcaaaagttagcctcagcaaaatatcttgaagatctatggcaacatttttcttcaatgataattctaagactggt |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| ||| ||||||||| ||| | |||||||| ||| |
|
|
| T |
13887286 |
atcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatcgatggaaaccgatttcttcaacgatgaatctaagacaggt |
13887187 |
T |
|
| Q |
301 |
atgagcctattgttcacaagctcaaaaattgactcaattgttaactttctaaaatttgtcgaatgaaactcgatactagctattttcctttgattctgc |
399 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||| ||||||| || ||||| ||||| ||||||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
13887186 |
atgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaaactttgttgaatgaaactcgatactcgctgttttcctttgtttctgc |
13887088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 7295750 - 7295855
Alignment:
| Q |
1 |
cttataacattctcagcaaattcatcaactttttgtatggatttctt--aagctttctttccatacctaagttaag--aaacctcatagccttccataca |
96 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| | |||||| |||||||||| ||||||||||||||| |||| ||||||| ||||| ||| |
|
|
| T |
7295750 |
cttataatattctcagcaaattcatcagctttttgtattgttttcttaaaagctttcttgtcatacctaagttaagaaaaacgtcatagctttccacaca |
7295849 |
T |
|
| Q |
97 |
caaatc |
102 |
Q |
| |
|
|||||| |
|
|
| T |
7295850 |
caaatc |
7295855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 7295875 - 7295946
Alignment:
| Q |
153 |
tgcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacatt |
224 |
Q |
| |
|
|||||| || |||||| |||||| |||||| |||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
7295875 |
tgcaaatggtatttcaaacaaatgtggttgtgaacaaccaggatcaacaccaaaagatatcatgcaaacatt |
7295946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 28667238 - 28667315
Alignment:
| Q |
184 |
aaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagcctcagcaaaatatcttgaagatct |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | | ||| |||||||||||| |
|
|
| T |
28667238 |
aaacaaccaggatcaacaccaaaagctatcatacaaacattgtcaaaagttagtcttaaaagaatgtcttgaagatct |
28667315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University