View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_25 (Length: 397)
Name: NF19289_low_25
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 160 - 390
Target Start/End: Original strand, 42257650 - 42257879
Alignment:
| Q |
160 |
tacaatgcataacttacaataagagaataaataaccctatcgagaagaaaaaagcaaactaaataaccgcaagattagaattttttgttaagaatacaga |
259 |
Q |
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| T |
42257650 |
tacaatgcataacttacaataagagaataaataaccctatcgagaagaaaa-agcaaactaaataaccgcaagattagaattttttgttaagaatacaga |
42257748 |
T |
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| Q |
260 |
attaagtattaaaacttcttgtaatgaaacttgtgtagtaattttttaaggttgacttctattggcagttcaaaaataagtttgactttctagcattgta |
359 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42257749 |
attaagtattaaaacttcttgtaatgaaacttgtgcagtaattttttaaggttgacttctattggcagttcaaaaataagtttgactttctagcattgta |
42257848 |
T |
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| Q |
360 |
caaacaaagcatacatgcaaatcttcttctc |
390 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42257849 |
caaacaaagcatacatgcaaatcttcttctc |
42257879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 42257518 - 42257632
Alignment:
| Q |
18 |
actttaactttctagatgcaaacgtactttgtagaacactacatgcataacttataatagtgttagtgattcataattttctcttgaaaagcaaatagaa |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42257518 |
acttgaactttctagatgcaaacgtactttgtagaacactacatgcataacttataatagtgttagtgattcataattttctcttgaaaagcaaatagaa |
42257617 |
T |
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| Q |
118 |
ttcgaaacactacgt |
132 |
Q |
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| T |
42257618 |
ttcgaaacactacgt |
42257632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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