View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_28 (Length: 376)
Name: NF19289_low_28
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 12836650 - 12836288
Alignment:
| Q |
1 |
gttaaaattctgtggcgcctctatagccgctatttgacaacaccagttatgagtgatgtttatcataattttgttgtggttgaatannnnnnncatttgg |
100 |
Q |
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| T |
12836650 |
gttaaaattctgtggcgcctctatagccgctatttgacaacactggttatgagtgatgtttatcataattttgttgtggttgaatatttttttcatttgg |
12836551 |
T |
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| Q |
101 |
aaggcttgtgttcgagtagttgactgaaaattgatgaccctttaaattgatgattaggataaatggggaggatcaaacctcaagctctgctgcaacaaag |
200 |
Q |
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| T |
12836550 |
aaggcttgtgttcgagtagttgactgaaaattgatgaccctttaaattgatgattaggataaatggggaggatcaaacctcaagctctgctgcaacaaag |
12836451 |
T |
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| Q |
201 |
caaaaggaagaagggcccttatcacatgagtccaataaatattgtattttacacattgactcttgtcatatttgtgttttttctctttgctacattcaaa |
300 |
Q |
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| T |
12836450 |
caaaaggaagaagggccgttatcacatgagtccaataaatattgtattttacacattgactcttgtcatatttgtgttttttctctttgctacattcaaa |
12836351 |
T |
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| Q |
301 |
tattggtctaataggtcagtaaattgaatgtgaaagctgattcatagtgataaatgatatgat |
363 |
Q |
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| T |
12836350 |
tattggtctaataggtcagtaaattgaatgtgaaagctgattcatagtgataaatgatatgat |
12836288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 42249470 - 42249540
Alignment:
| Q |
150 |
atgattaggataaatggggaggatcaaacctcaagctctgctgcaacaaagcaaaaggaagaagggccctt |
220 |
Q |
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| T |
42249470 |
atgattaggttaaatggctaggatcaaacctcaggctctgttacaacaaagtaaaaggaagaagggacctt |
42249540 |
T |
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