View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_30 (Length: 368)
Name: NF19289_low_30
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 40 - 353
Target Start/End: Original strand, 29511325 - 29511638
Alignment:
| Q |
40 |
gggagatttaacatgcatacccatctgattgtgactctctcatcaattttcttctttggttcaactggatgtcttcctgtcatcatttcaacaagcaata |
139 |
Q |
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| T |
29511325 |
gggagatttaacatgcatacccatctgattgtgactctctcatcaattttcttctttggttcaactggatgtcttcctgtcatcatttcaacaagcaata |
29511424 |
T |
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| Q |
140 |
caccaaatgaataaacgtcactcttttctgtgagttgataagttctcaagtactcaggatccatatatccagctgttcctttaacttgagttgaaatatg |
239 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29511425 |
caccaaatgaataaacatcactcttttctgtgagttgataagttctcaagtactcaggatccatatatccagctgttcctttaacttgagttgaaatatg |
29511524 |
T |
|
| Q |
240 |
agttgcaccagggtcttcggacaatcttgcaaaaccaaagtctgccactttagcccttagattctcactaattaggatgtttgatgctttgatgtctcta |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29511525 |
agttgcaccagggtcttcggacaatcttgcaaaaccaaagtctgccactttagcccttagattctcactaattaggatgtttgatgctttgatatctcta |
29511624 |
T |
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| Q |
340 |
tgtataattggatt |
353 |
Q |
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|||||||||||||| |
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| T |
29511625 |
tgtataattggatt |
29511638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 91 - 338
Target Start/End: Original strand, 24915576 - 24915826
Alignment:
| Q |
91 |
ttctttggttcaactggatgtcttcctgtcatcatttcaacaagcaatacaccaaatgaataaacgtcactcttttctgtgagttgataagttctcaagt |
190 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| | |||||| ||||||| | |
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| T |
24915576 |
ttctttggttcaactggatgtcttcctgtcatgatttcaacaagtaacacaccaaatgaataaacatcactcttttccgagagttggcgtgttctcatat |
24915675 |
T |
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| Q |
191 |
actcaggatccatatatccagctgttcctttaacttgagttgaaatatgagttgcaccagggtcttc-gga--caatcttgcaaaaccaaagtctgccac |
287 |
Q |
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| |||||||||| ||| || |||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||||||||| |
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| T |
24915676 |
aatcaggatccaaataaccggctgttcctttaacttgagttgaaatatgagttgcattagggtcttctggagccaaccttgcaaaaccaaagtctgccac |
24915775 |
T |
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| Q |
288 |
tttagcccttagattctcactaattaggatgtttgatgctttgatgtctct |
338 |
Q |
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||| ||||||||| | || | |||| ||| |||||||| ||||||||||| |
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| T |
24915776 |
tttggcccttagactgtctgttattaagatatttgatgccttgatgtctct |
24915826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 11193263 - 11193364
Alignment:
| Q |
126 |
ttcaacaagcaatacaccaaatgaataaacgtcactcttttctgtgagttgataagttctcaagtactcaggatccatatatccagctgttcctttaact |
225 |
Q |
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|||||||||||| ||||| || |||||||||||||||||||| || |||||||||||| ||||||| || ||||||| || ||||||||||| |||||| |
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| T |
11193263 |
ttcaacaagcaaaacaccgaacgaataaacgtcactcttttcggttagttgataagttttcaagtattccggatccaagtagccagctgttcccttaact |
11193362 |
T |
|
| Q |
226 |
tg |
227 |
Q |
| |
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|| |
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| T |
11193363 |
tg |
11193364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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