View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19289_low_32 (Length: 360)
Name: NF19289_low_32
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 14 - 349
Target Start/End: Original strand, 33571558 - 33571893
Alignment:
| Q |
14 |
gagatgcatctaaattcaatcttttcacgatcattaccaccaataatctttgaacacatttcactaacaaatccttttggttttcccatttctccatctt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33571558 |
gagatgcatctaaattcaatcttttcacgatcattaccaccaataatctttgaacacatttcactaacaaatccttttggttttcccatttctccatctt |
33571657 |
T |
|
| Q |
114 |
tatcatcatcggaatcaatcaaaatctcttcaattgctggaccatcccaaaggtgcttttcatccacattattcttctgtggcatattattaggagtgcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33571658 |
tatcatcatcggaatcaatcaaaatctcttcaattgctggaccatcccaaaggtgcttttcatccacattattcttctgtggcatattattaggagtgcc |
33571757 |
T |
|
| Q |
214 |
tgaggaagaaaatgaagaaaatgatgaagatcctggcgatgctaattgatcagaagataatgaactaggtgatgttgttcttgatgatggagagcttaat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33571758 |
tgaggaagaaaatgaagaaaatgatgaagatcctggcgatgctaattgatcagaagataatgaactaggtgatgttgttcttgatgatggagagcttaat |
33571857 |
T |
|
| Q |
314 |
gaacctccaaaaccttgtatttcagttgttattttt |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
33571858 |
gaacctccaaaaccttgtatttcagttgttattttt |
33571893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University