View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_35 (Length: 345)
Name: NF19289_low_35
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 48806182 - 48806496
Alignment:
| Q |
18 |
tgtgaagatttatgagagaattcaatgagtttgggagagacccagttagggaattgtgtgaaagatcaagatattcaagtgatttgagtgagattatgga |
117 |
Q |
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| T |
48806182 |
tgtgaagatttatgagagaattcaatgagtttgggagagacccagttagggaattgtgtgaaagatcaagagattcaagtgatttgagtgagattatgga |
48806281 |
T |
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| Q |
118 |
tggagggattggaccagagaaggaattggatcggagagttaaggttttgaggttggaaagggaagagattgaagaaggaattgagccaaagaagttgtta |
217 |
Q |
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| T |
48806282 |
tggagggattggaccagagaaggaattggatcggagagttaaggttttgaggttggaaagggaagagattgaagaaggaattgagccaaagaagttgtta |
48806381 |
T |
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| Q |
218 |
tcagagaggtctagtgtgatgagttgggtgagtttagagatgagtggcgtgagtgagcctgagtagcttgcagggtctagtgtgatttggttgatgtgtg |
317 |
Q |
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| T |
48806382 |
tcagagaggtctagtgtgatgagttgggtgagtttagagatgagtggcgtgagtgagcctgagtagcttgcagggtctagtgtgatttggttgatgtgtg |
48806481 |
T |
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| Q |
318 |
tggaatctgtggtgc |
332 |
Q |
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| T |
48806482 |
tggaatctgtggtgc |
48806496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 13567652 - 13567584
Alignment:
| Q |
143 |
ttggatcggagagttaaggttttgaggttggaaagggaagagattgaagaaggaattgagccaaagaag |
211 |
Q |
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| T |
13567652 |
ttggatcagagggttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaag |
13567584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 25065412 - 25065346
Alignment:
| Q |
18 |
tgtgaagatttatgagagaattcaatgagtttgggagagacccagttagggaattgtgtgaaagatc |
84 |
Q |
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| T |
25065412 |
tgtgaagttttgtgagagaattcaaagagtttgggagagaccatgatagtgaattgtgtgaaagatc |
25065346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 31860080 - 31860152
Alignment:
| Q |
139 |
ggaattggatcggagagttaaggttttgaggttggaaagggaagagattgaagaaggaattgagccaaagaag |
211 |
Q |
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| T |
31860080 |
ggaattggatcagagggttaagattttgaggttggaaaggctagatattgaagaaggaatagagtcagagaag |
31860152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 44339218 - 44339175
Alignment:
| Q |
155 |
gttaaggttttgaggttggaaagggaagagattgaagaaggaat |
198 |
Q |
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| T |
44339218 |
gttaagattttgaggttggaaagggaagatattgaagaaggaat |
44339175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 35712578 - 35712443
Alignment:
| Q |
17 |
atgtgaagatttatgagagaattcaatgagtttgggagagacccagttagggaattgtgtgaaagatcaagatattcaagtgatttgagtgagattatgg |
116 |
Q |
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|||||||| ||| ||||||||||||| |||||| ||||||||| | ||| ||||||||||||||||||||| |||| ||||||||||||| |||||||| |
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| T |
35712578 |
atgtgaaggtttgtgagagaattcaaagagtttaggagagaccatgatagtgaattgtgtgaaagatcaagagattcgagtgatttgagtgtgattatgg |
35712479 |
T |
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| Q |
117 |
atggagggattggaccagagaaggaattggatcgga |
152 |
Q |
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||||| |||||| ||||||||||| ||||||||||| |
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| T |
35712478 |
atggaaggattgaaccagagaaggtattggatcgga |
35712443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 13385645 - 13385763
Alignment:
| Q |
34 |
agaattcaatgagtttgggagagacccagttagggaattgtgtgaaagatcaagatattcaagtgatttgagtgagattatggatggagggattggacca |
133 |
Q |
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|||| |||| |||||||||||||||| | ||| ||||||||||||||||||||| |||| ||||||||||||| | ||||||||| |||||||| |||| |
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| T |
13385645 |
agaactcaaagagtttgggagagaccatgatagtgaattgtgtgaaagatcaagagattcgagtgatttgagtgtggttatggatgaagggattgaacca |
13385744 |
T |
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| Q |
134 |
gagaaggaattggatcgga |
152 |
Q |
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| T |
13385745 |
gagaaggtattggatcgga |
13385763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 205 - 324
Target Start/End: Complemental strand, 34057160 - 34057041
Alignment:
| Q |
205 |
aaagaagttgttatcagagaggtctagtgtgatgagttgggtgagtttagagatgagtggcgtgagtgagcctgagtagcttgcagggtctagtgtgatt |
304 |
Q |
| |
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|||||||||||| | || |||| |||||||| |||| |||||||| ||||||||||| |||||||||||||||||||||||||||| || |||||| |
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| T |
34057160 |
aaagaagttgttgccggataggtatagtgtgacaagtttggtgagttgagagatgagtgaggtgagtgagcctgagtagcttgcagggttgagggtgatt |
34057061 |
T |
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| Q |
305 |
tggttgatgtgtgtggaatc |
324 |
Q |
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| T |
34057060 |
tgattgatgtgtgtggaatc |
34057041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 5061885 - 5061940
Alignment:
| Q |
155 |
gttaaggttttgaggttggaaagggaagagattgaagaaggaattgagccaaagaa |
210 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||| |||||| |||| |
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| T |
5061885 |
gttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaa |
5061940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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