View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_42 (Length: 321)
Name: NF19289_low_42
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 39 - 290
Target Start/End: Complemental strand, 51151610 - 51151359
Alignment:
| Q |
39 |
accaagactgagttaaaccatttcctctttgacagaaaatcagcagcatcttgtctcaggaagttcaacactactcacaaacaagagcaaggaacataat |
138 |
Q |
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| T |
51151610 |
accaagactgagttaaaccatttcctctttgacagaaaatcagcagcatcttgtctcaggaagttcaacactactcacaaacaagagcaaggaacataat |
51151511 |
T |
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| Q |
139 |
ggttagtaccaagtacataaaaataaatgtagtaattattaatnnnnnnntgcagttattagtagtggtttagtgttagtgaaataaactaatccttaaa |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51151510 |
ggttagtaccaagtacataaaaataaatgtagtaattattaataaaaaaatgcagttactagtagtggtttagtgttagtgaaataaactaatccttaaa |
51151411 |
T |
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| Q |
239 |
aactgtaccattagcagaaaatctccacctnnnnnnnctgaaagttcataac |
290 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
51151410 |
aactgtaccattagcaaaaaatctccacctaaaaaaactgaaagttcataac |
51151359 |
T |
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