View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19289_low_43 (Length: 319)

Name: NF19289_low_43
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19289_low_43
NF19289_low_43
[»] chr5 (2 HSPs)
chr5 (97-302)||(33541703-33541908)
chr5 (107-299)||(18571165-18571357)
[»] chr6 (12 HSPs)
chr6 (114-262)||(212955-213103)
chr6 (107-199)||(7029976-7030068)
chr6 (110-299)||(9170871-9171054)
chr6 (229-299)||(7025810-7025880)
chr6 (110-299)||(9159374-9159557)
chr6 (110-199)||(7012983-7013072)
chr6 (225-299)||(7012874-7012948)
chr6 (110-199)||(7025919-7026008)
chr6 (110-195)||(7041639-7041724)
chr6 (240-299)||(7046893-7046952)
chr6 (229-291)||(7029875-7029937)
chr6 (228-299)||(7041550-7041621)
[»] chr1 (4 HSPs)
chr1 (59-192)||(8814178-8814311)
chr1 (49-192)||(247022-247168)
chr1 (49-192)||(251206-251355)
chr1 (146-195)||(235374-235423)
[»] chr3 (2 HSPs)
chr3 (60-195)||(9494646-9494784)
chr3 (47-284)||(9343914-9344151)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 97 - 302
Target Start/End: Complemental strand, 33541908 - 33541703
Alignment:
Q  97 ctccactgttcagttagtggctgaatctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgttagtggatgtttatgat 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541908 ctccactgttcagttagtggctgaatctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgttagtggatgtttatgat 33541809  T
Q  197 tgtacacgtatcggcttccctggtcacaatcctgtaaggattcatttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggag 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541808 tgtacacgtatcggcttccctggtcacaatcctgtaaggattcatttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggag 33541709  T
Q  297 atattg 302  Q
    ||||||    
T  33541708 atattg 33541703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 299
Target Start/End: Complemental strand, 18571357 - 18571165
Alignment:
Q  107 cagttagtggctgaatctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgttagtggatgtttatgattgtacacgta 206  Q
    |||||| ||| |||||||||||||| ||||||  || | |||||||| ||||||||| |||| ||| |||||||||  || |||||||| |||    ||     
T  18571357 cagttaatggatgaatctttggttgttggtgggaacatgaaattcttggtggagagcgagggcgatctgttgttagctgacgtttatgagtgtgtgggtg 18571258  T
Q  207 tcggcttccctggtcacaatcctgtaaggattcatttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggagata 299  Q
    |  | ||| ||| |||  |||| ||||||||| |||| ||||||||| |||||||||||| | |||||||||| || | ||||||||| ||||    
T  18571257 ttaggttctctgatcatgatcccgtaaggattgatttctttaagcttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggata 18571165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 114 - 262
Target Start/End: Original strand, 212955 - 213103
Alignment:
Q  114 tggctgaatctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgttagtggatgtttatgattgtacacgtatcggctt 213  Q
    |||||||| | ||||||| |||||||| | | |||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||  || ||    
T  212955 tggctgaaccattggttgatggtggaggcatgaaattcttagtggagagcgagggtgatttgttgttagtagatgtttatgagtgtatacgtactgggtt 213054  T
Q  214 ccctggtcacaatcctgtaaggattcatttgtttaagcttaatgagaag 262  Q
    ||||| |||  ||||||||||||||||| ||||||||||||||||||||    
T  213055 ccctgatcatgatcctgtaaggattcatgtgtttaagcttaatgagaag 213103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 7030068 - 7029976
Alignment:
Q  107 cagttagtggctgaatctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgttagtggatgtttatgattgt 199  Q
    ||||||||||||||  ||||||||||||||||| | || |||||||||||||||||| |||| ||||||||||||| ||||||||||||||||    
T  7030068 cagttagtggctgagcctttggttggtggtggaaatgtgaaattcttagtggagagcgagggggatttgttgttagcggatgtttatgattgt 7029976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 110 - 299
Target Start/End: Complemental strand, 9171054 - 9170871
Alignment:
Q  110 ttagtggctgaatctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgttagtggatgtttatgattgtacacgtatcg 209  Q
    ||||| |||||| ||||||||||||||||  || | |||||||||||||||||| |||| ||||||||||||| ||| ||||||||||||    |||| |    
T  9171054 ttagttgctgaacctttggttggtggtgggaacatgaaattcttagtggagagcgagggagatttgttgttagcggacgtttatgattgtctttgtattg 9170955  T
Q  210 gcttccctggtcacaatcctgtaaggattcatttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggagata 299  Q
       |   ||      |||||||||||||| ||||||||||||||||||||||||||| | |||||||||| |||| ||||||||| ||||    
T  9170954 atcttaatg------atcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggata 9170871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 7025880 - 7025810
Alignment:
Q  229 tgtaaggattcatttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggagata 299  Q
    |||||||||| ||||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||    
T  7025880 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagata 7025810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 299
Target Start/End: Original strand, 9159374 - 9159557
Alignment:
Q  110 ttagtggctgaatctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgttagtggatgtttatgattgtacacgtatcg 209  Q
    |||||||||||| ||||||||||||||||  || | |||||||||||||||||| |||| ||||||||||||  ||| | ||||||||||    |||| |    
T  9159374 ttagtggctgaacctttggttggtggtgggaacataaaattcttagtggagagcgagggagatttgttgttatcggaggcttatgattgtcttagtattg 9159473  T
Q  210 gcttccctggtcacaatcctgtaaggattcatttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggagata 299  Q
       |   ||      |||||||||||||| |||||||||||||||| |||||||||| | |||||||||| |||| ||||||||| ||||    
T  9159474 atcttaatg------atcctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggata 9159557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 7013072 - 7012983
Alignment:
Q  110 ttagtggctgaatctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgttagtggatgtttatgattgt 199  Q
    |||||||||||| ||||||||||||| || ||| | |||||||||||||||||| |||  |||||||||||||  |||||||||||||||    
T  7013072 ttagtggctgaacctttggttggtggcggggacatgaaattcttagtggagagcgaggaggatttgttgttagcagatgtttatgattgt 7012983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 225 - 299
Target Start/End: Complemental strand, 7012948 - 7012874
Alignment:
Q  225 atcctgtaaggattcatttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggagata 299  Q
    |||||||||| ||| ||||||||||||||||||||||||||| | ||||||||||||| |  |||||||||||||    
T  7012948 atcctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagata 7012874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 7026008 - 7025919
Alignment:
Q  110 ttagtggctgaatctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgttagtggatgtttatgattgt 199  Q
    |||||||||||| ||||| |||| || || ||| | |||||||||||||||||| |||| ||||||||||||| |||||||||| |||||    
T  7026008 ttagtggctgaacctttgattggcggcggggacatgaaattcttagtggagagcgagggggatttgttgttagcggatgtttataattgt 7025919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 7041724 - 7041639
Alignment:
Q  110 ttagtggctgaatctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgttagtggatgtttatga 195  Q
    |||||||||||| ||||||||||| ||||| ||   |||||||||| ||| |||||||| ||||||||||||| ||||||||||||    
T  7041724 ttagtggctgaacctttggttggtcgtggaaacaagaaattcttagcggaaagcaagggagatttgttgttagcggatgtttatga 7041639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 7046952 - 7046893
Alignment:
Q  240 atttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggagata 299  Q
    ||||||||||||||||||||||||||| | ||||||||||||||| ||||||||| ||||    
T  7046952 atttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggata 7046893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 7029937 - 7029875
Alignment:
Q  229 tgtaaggattcatttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagttt 291  Q
    |||||||||| ||||||||||||||||||||||||||| | ||||||||||||| | ||||||    
T  7029937 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagttt 7029875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 7041621 - 7041550
Alignment:
Q  228 ctgtaaggattcatttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggagata 299  Q
    ||||| ||||| |||||||||| |||||||||||||||| | ||||||||||||| |  |||||||| ||||    
T  7041621 ctgtatggattgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggata 7041550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 59 - 192
Target Start/End: Original strand, 8814178 - 8814311
Alignment:
Q  59 gacaaaactggacggacagttgctgttggaccggacgactccactgttcagttagtggctgaatctttggttggtggtggagacgtcaaattcttagtgg 158  Q
    ||||||||||||| ||| ||| ||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||| || ||  | |||||| ||||||    
T  8814178 gacaaaactggacagactgttactgttggaccggatgactcaactgttcagttagtggctgaatctttgcttgctggcggggatattaaattcctagtgg 8814277  T
Q  159 agagcaagggtgatttgttgttagtggatgttta 192  Q
    ||||||||||||||||||||||||  ||||||||    
T  8814278 agagcaagggtgatttgttgttagcagatgttta 8814311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 247168 - 247022
Alignment:
Q  49 ttatgctgtcgacaaaactggacggacagttgctgttggaccggacgac---tccactgttcagttagtggctgaatctttggttggtggtggagacgtc 145  Q
    |||||| || |||||||||||| |||||||||   |||||||||| ||    |||||||| | |||||| ||||||||||||||||||||||||||  |     
T  247168 ttatgcggtagacaaaactggatggacagttggatttggaccggaggatgattccactgtccggttagttgctgaatctttggttggtggtggagatatt 247069  T
Q  146 aaattcttagtggagagcaagggtgatttgttgttagtggatgttta 192  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||    
T  247068 aaattcttagtggagagcaagggtgatttgttgttaatagatgttta 247022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 251206 - 251355
Alignment:
Q  49 ttatgctgtcgacaaaactggacggacagttgctgttg------gaccggacgactccactgttcagttagtggctgaatctttggttggtggtggagac 142  Q
    |||||| || ||||| ||||||||||||||| ||||||      |||| || || |||||||| |||||||||||| ||||||||||||||||||||||     
T  251206 ttatgcggtagacaatactggacggacagttactgttgaacttggacctgaggattccactgtccagttagtggctcaatctttggttggtggtggagat 251305  T
Q  143 gtcaaattcttagtggagagcaagggtgatttgttgttagtggatgttta 192  Q
     | |||||||| ||||||||| |  |||||||||||||||  ||||||||    
T  251306 attaaattcttggtggagagcgacagtgatttgttgttagcagatgttta 251355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 235423 - 235374
Alignment:
Q  146 aaattcttagtggagagcaagggtgatttgttgttagtggatgtttatga 195  Q
    |||||||||||||||||| | ||||||||||||||||  |||||||||||    
T  235423 aaattcttagtggagagcgacggtgatttgttgttagcagatgtttatga 235374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 60 - 195
Target Start/End: Original strand, 9494646 - 9494784
Alignment:
Q  60 acaaaactggacggacagttgctgttggaccggacgactccactgttcagttagtggctgaatctttggt---tggtggtggagacgtcaaattcttagt 156  Q
    |||||||||||||||||| | || |||||| ||| |||| |||| |  ||||||||||||||||||||||   |||||| || ||| |||||||||||||    
T  9494646 acaaaactggacggacagctactcttggactggatgacttcactttcgagttagtggctgaatctttggtttctggtgggggggacatcaaattcttagt 9494745  T
Q  157 ggagagcaagggtgatttgttgttagtggatgtttatga 195  Q
     |||||  | ||||||||||||||||| |||||||||||    
T  9494746 cgagagtgacggtgatttgttgttagtagatgtttatga 9494784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 284
Target Start/End: Complemental strand, 9344151 - 9343914
Alignment:
Q  47 ctttatgctgtcgacaaaactggacggacagttgctgttggaccggacgactccactgttcagttagtggctgaatctttggttggtggtggagacgtca 146  Q
    ||||||| ||||||||||| ||| | |||||||   ||||| |||||| |||| | ||| || |||||   |||| ||||||||||||| || |||   |    
T  9344151 ctttatgttgtcgacaaaaatggtcagacagttatggttgggccggacaactcgaatgtccacttagttattgaacctttggttggtggcggggacaaaa 9344052  T
Q  147 aattcttagtggagagcaagggtgatttgttgttagtggatgtttatgattgtacacgtatcggcttccctggtcacaatcctgtaaggattcatttgtt 246  Q
    |||||||||| |||||  |||| || |||||| |||||||  ||||||| |||    || |||  ||||| ||||   || || ||||| || || ||||    
T  9344051 aattcttagtcgagagagagggagagttgttgctagtggacatttatgagtgtttttgtttcgagttcccgggtcctgatgctataagggttgatgtgtt 9343952  T
Q  247 taagcttaatgagaaggagacggagtgggtgaagttaa 284  Q
    ||||||| |||||| ||||| | |||||||||||||||    
T  9343951 taagcttgatgagatggagaagaagtgggtgaagttaa 9343914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University