View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_45 (Length: 310)
Name: NF19289_low_45
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 5391382 - 5391092
Alignment:
| Q |
5 |
ggtagattatactaaacaaacaaattattgtcaataaaatacgtcacaacatacacta---ttatataattagatgaactatatttttattcaggtgggt |
101 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5391382 |
ggtaaattaaactaaacaaacaaattattgtcaataaaatacgtcacaacatacactactattatataattagatgaactatatttttattcaggtgggt |
5391283 |
T |
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| Q |
102 |
aagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391282 |
aagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacg |
5391183 |
T |
|
| Q |
202 |
ctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatgctaattt |
292 |
Q |
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| T |
5391182 |
ctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaaggtgcatgggaatgttattcaacagcttcagatgctaattt |
5391092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 86 - 292
Target Start/End: Complemental strand, 5400017 - 5399811
Alignment:
| Q |
86 |
ttttattcaggtgggtaagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggc |
185 |
Q |
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| T |
5400017 |
ttttattcaggtgggtaagaaaaaaggaacgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggc |
5399918 |
T |
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| Q |
186 |
acgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatg |
285 |
Q |
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| T |
5399917 |
acgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaaggtgcatgggaatgttattcaacagcttcagatg |
5399818 |
T |
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| Q |
286 |
ctaattt |
292 |
Q |
| |
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||||||| |
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| T |
5399817 |
ctaattt |
5399811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 53 - 292
Target Start/End: Complemental strand, 5394869 - 5394630
Alignment:
| Q |
53 |
acatacactattatataattagatgaactatatttttattcaggtgggtaagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttgga |
152 |
Q |
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||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
5394869 |
acatacattattatataattaaatgaacaatatatttgttcaggtgggtaagaaaaaaggaacgacatggttcattaatcgaccacaccccatctttgga |
5394770 |
T |
|
| Q |
153 |
ttttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaag |
252 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5394769 |
ttttcaccttatagcatgatgaacgtcattggcacgctttgtgtttacgccgcaatttgcaagcatgagggtcttcctttaaggtttcctggctcaaaag |
5394670 |
T |
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| Q |
253 |
ctgcatgggaatgttattcaacagcttcagatgctaattt |
292 |
Q |
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| T |
5394669 |
gtgcatgggagtgttattctactgcttcagatgctaattt |
5394630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 3819103 - 3819018
Alignment:
| Q |
144 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttcc |
229 |
Q |
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||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||||||||||| |||||||||||| |||| |
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| T |
3819103 |
atctttggattttcaccttacagtatgatgaatatcattggaactatttgtgtttacgctgcaatttgtaagcatgagggtgttcc |
3819018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 47338774 - 47338859
Alignment:
| Q |
144 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttcc |
229 |
Q |
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||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||||||||||| |||||||||||| |||| |
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| T |
47338774 |
atctttggattttcaccttacagtatgatgaatatcattggaactatttgtgtttacgctgcaatttgtaagcatgagggtgttcc |
47338859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 47347233 - 47347317
Alignment:
| Q |
133 |
gaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagca |
217 |
Q |
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| T |
47347233 |
gacctcaagttatatttggattttcaccttatagtttgatgaatctcgttggtacactttgtgtttatgctgcaatttgcaagca |
47347317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 47349783 - 47349859
Alignment:
| Q |
144 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatga |
220 |
Q |
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||||||||||| ||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||||||||| |
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| T |
47349783 |
atctttggattctcaccttacagtttgatgaatgttgttggcacgctttgcctttacgctgcaatttgcaagcatga |
47349859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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