View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_47 (Length: 296)
Name: NF19289_low_47
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 35410058 - 35409774
Alignment:
| Q |
16 |
catgactgataaataaactcattttccaaacataaaaaactttgcatgcgatgtttcaggtctaacaaaaagcaatattatcatgtaataataatgagat |
115 |
Q |
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| T |
35410058 |
catgactaataaataaactcattttccaaacatcaaaaactttgcatgcgatgtttcaggtctaacaaaaagcaatattatcatgtaataataatgagat |
35409959 |
T |
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| Q |
116 |
aaaatgataatttttataactctacttcttaaaagacttggttctattatattcagtaggttattgaaatggtaagaagtgaagtttataagaagacaaa |
215 |
Q |
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| T |
35409958 |
acaatgataacttttataactctacttcttaaaagacttggttctattatattcaataggttattgaaatggtaagaagtgaagtttataagaagacaaa |
35409859 |
T |
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| Q |
216 |
cttaaaaggagagttgttc-----------------caccttggccttgtcttctaaatttttctcataactagcaaatccctct |
283 |
Q |
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| T |
35409858 |
cttaaagggagatttgttccacttacattgtcttttcaccttggccttgtcttctaagtttttctcataactagcaaatccctct |
35409774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 29159883 - 29159982
Alignment:
| Q |
20 |
actgataaataaactcatttt----ccaaacataaaaaactttgcatgcgatgtttcaggtctaacaaaaagcaatattatcatgtaataataatgagat |
115 |
Q |
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| T |
29159883 |
actgataaataaactcattttttttccaaatataaaaac--tagaatgtgatgtttcaagtctaacaaaaagcaatattatcatgtaataataatgagat |
29159980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 29160040 - 29160136
Alignment:
| Q |
142 |
tcttaaaagacttggttctattatattcagtaggttattgaaatggtaagaagtgaagtttataagaagacaaacttaaaagg-agagttgttccac |
237 |
Q |
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| T |
29160040 |
tcttaaaagacttggttctattctacccgctaggtaattgaaatggtaagaattgaagtttacaaggagacaaatttaaacggaagagttgtcccac |
29160136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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