View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_52 (Length: 273)
Name: NF19289_low_52
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 36953204 - 36952991
Alignment:
| Q |
15 |
aaaatgcacaagctacaaacctacaactgatcaagtagtgatgttactaaagaaaattacataaataaaataaaattacatctcttaattgtttaaatac |
114 |
Q |
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| T |
36953204 |
aaaatgcacaagctacaaacctacaactgatcaagtagtgaagttactaaagaaaattacataaataaaataaaattacatctcttaattgtttaaatgc |
36953105 |
T |
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| Q |
115 |
ttctagcaagcatttcttgatacttcctatcagattcttgtttttccaacttgaacttctcatgacaattagcaataaacatttcagctaacatatcaat |
214 |
Q |
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| T |
36953104 |
ttctagcaagcatttcttgatacttcctatcagattcttgtttttccaacttgaacttctcatgacaattagcaataaacatttcagctaacatatcaat |
36953005 |
T |
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| Q |
215 |
attctcattaacaa |
228 |
Q |
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|||||||||||||| |
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| T |
36953004 |
attctcattaacaa |
36952991 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 22870048 - 22870136
Alignment:
| Q |
125 |
catttcttgatacttcctatcagattcttgtttttccaacttgaacttctcatgacaattagcaataaacatttcagctaacatatcaa |
213 |
Q |
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|||||| |||||| | |||| |||||| | ||||| | ||| ||||||||||||||||| ||||| |||||||| || |||||||||| |
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| T |
22870048 |
catttcctgataccttctataagattcctccttttcaaccttaaacttctcatgacaatttgcaatgaacatttctgccaacatatcaa |
22870136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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