View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19289_low_53 (Length: 266)

Name: NF19289_low_53
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19289_low_53
NF19289_low_53
[»] chr4 (4 HSPs)
chr4 (1-256)||(5064854-5065109)
chr4 (31-112)||(17379657-17379737)
chr4 (174-234)||(5065100-5065162)
chr4 (26-64)||(5064815-5064853)
[»] chr7 (1 HSPs)
chr7 (18-246)||(16176158-16176387)
[»] chr6 (2 HSPs)
chr6 (80-241)||(23089148-23089309)
chr6 (32-112)||(21738251-21738331)
[»] scaffold0126 (1 HSPs)
scaffold0126 (18-243)||(33099-33323)
[»] chr8 (4 HSPs)
chr8 (160-238)||(38492387-38492465)
chr8 (69-115)||(18034781-18034827)
chr8 (18-74)||(9416145-9416201)
chr8 (32-165)||(24370735-24370869)
[»] chr5 (4 HSPs)
chr5 (18-165)||(24850756-24850903)
chr5 (32-81)||(17300837-17300886)
chr5 (33-154)||(30189497-30189618)
chr5 (32-77)||(17287962-17288007)
[»] scaffold0613 (1 HSPs)
scaffold0613 (18-87)||(2516-2585)
[»] chr3 (1 HSPs)
chr3 (34-112)||(10710348-10710425)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 5064854 - 5065109
Alignment:
Q  1 cttagcaaatcactcacgaatgtgtgataattgttgttgagtatatgttgttgatgtgaattcatgaatttgaagatgatatatgtgttgttgtgattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5064854 cttagcaaatcactcacgaatgtgtgataattgttgttgagtatatgttgttgatgtgaattcatgaatttgaagatgatatatgtgttgttgtgattaa 5064953  T
Q  101 gttgttgtgtttgatagttttttagaaaatggatcaagaatggagaagcttgatgttggtgaattcaagtgaattgatgatgttgttgtgttgaattagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5064954 gttgttgtgtttgatagttttttagaaaatggatcaagaatggagaagcttgatgttggtgaattcaagtgaattgatgatgttgttgtgttgaattagc 5065053  T
Q  201 atgaatgaattttctgttttgaactataagttttggatatggggttttgatgatgt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5065054 atgaatgaattttctgttttgaactataagttttggatatggggttttgatgatgt 5065109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 17379737 - 17379657
Alignment:
Q  31 ttgttgttgagtatatgttgttgatgtgaattcatgaatttgaagatgatatatgtgttgttgtgattaagttgttgtgttt 112  Q
    |||||||| ||||||||||| ||||| |||||||||| ||||| ||||||| ||||| |||| || ||||||||||||||||    
T  17379737 ttgttgttaagtatatgttgatgatgagaattcatgagtttgatgatgataaatgtgatgttttg-ttaagttgttgtgttt 17379657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 5065100 - 5065162
Alignment:
Q  174 ttgatgatgttgttgtgttgaattagcatgaatgaat--tttctgttttgaactataagtttt 234  Q
    |||||||||||||||||||||||||||||||| ||||   |||| ||||||||||||||||||    
T  5065100 ttgatgatgttgttgtgttgaattagcatgaaggaatgaattctcttttgaactataagtttt 5065162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 5064815 - 5064853
Alignment:
Q  26 gataattgttgttgagtatatgttgttgatgtgaattca 64  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  5064815 gataattgttgttgggtatatgttgttgatgtgaattca 5064853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 16176387 - 16176158
Alignment:
Q  18 gaatgtgtgataattgttgttgagtatatgttgttgatgtgaattcatgaatttgaagatgatatatgtgttgttgtgattaagttgttgtgtttgat-a 116  Q
    |||| |||||||| | |||||| ||||||||||| |||||||||||||||||||||||| |||||  |||||||||||||| ||||||||||||| || |    
T  16176387 gaatatgtgataaatattgttgggtatatgttgtggatgtgaattcatgaatttgaagaagatattagtgttgttgtgattgagttgttgtgtttaatga 16176288  T
Q  117 gttttttagaaaatggatcaagaatggagaagcttgatgttggtgaattcaagtgaattgatgatgttgttgtgttgaattagcatgaatgaattttctg 216  Q
    ||||||  |||||||| |||  ||| |||||| ||||| ||||||||||  |||||||| |||||||| ||||||||||||| |||||||||||||||||    
T  16176287 gtttttgtgaaaatgggtcacaaattgagaagtttgattttggtgaattggagtgaattaatgatgttattgtgttgaattaacatgaatgaattttctg 16176188  T
Q  217 ttttgaactataagttttggatatggggtt 246  Q
    |||||||  ||||||||||| |||||||||    
T  16176187 ttttgaatcataagttttgggtatggggtt 16176158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 80 - 241
Target Start/End: Original strand, 23089148 - 23089309
Alignment:
Q  80 tatatgtgttgttgtgattaagttgttgtgtttgatagttttttagaaaatggatcaagaatggagaagcttgatgttggtgaattcaagtgaattgatg 179  Q
    ||||||||||| ||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  23089148 tatatgtgttgctgtgattaagttgttgtgtttgatgatttttgagaaaatggatcaagaatggagaagtttgattttggtgaattcaagtgaattgatg 23089247  T
Q  180 atgttgttgtgttgaattagcatgaatgaattttctgttttgaactataagttttggatatg 241  Q
    ||||||||||| ||||||||||||| || |||||||||||||||   |||||||||| ||||    
T  23089248 atgttgttgtggtgaattagcatgattggattttctgttttgaatcttaagttttgggtatg 23089309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 21738251 - 21738331
Alignment:
Q  32 tgttgttgagtatatgttgttgatgtgaattcatgaatttgaagatgatatatgtgttgttgtgattaagttgttgtgttt 112  Q
    |||||||  |||||||||  |||||| ||||||| |||| |  ||||||| ||||||||||||| |||||||||| |||||    
T  21738251 tgttgttaggtatatgttagtgatgttaattcataaattgggtgatgataaatgtgttgttgtggttaagttgttttgttt 21738331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 33099 - 33323
Alignment:
Q  18 gaatgtgtgataattgttgttgagtatatgttgttgatgtgaattcatgaatttgaagatgatatatgtgttgttgtgattaagttgttgtgttt-gata 116  Q
    |||| ||||||||||||||||  |||| ||||||||||| ||||| |||| |||||||||||||  ||||  ||| ||| || ||| | |||||| |||     
T  33099 gaatatgtgataattgttgttaggtatgtgttgttgatgagaatttatgattttgaagatgataattgtgaagtt-tgagtatgttttggtgttttgatg 33197  T
Q  117 gttttttagaaaatggatcaagaatggagaagcttgatgttggtgaattcaagtgaattgatgatgttgttgtgttgaattagcatgaatgaattttctg 216  Q
     | ||| ||||||||||||||||||||||||| || || ||| | ||||  ||||||||||||||| ||||||||||| |||  ||||||| |||||||     
T  33198 atatttgagaaaatggatcaagaatggagaagtttcattttgattaattggagtgaattgatgatg-tgttgtgttgagttaagatgaatggattttcta 33296  T
Q  217 ttttgaactataagttttggatatggg 243  Q
    ||||||||||| |||||||||| ||||    
T  33297 ttttgaactatgagttttggatgtggg 33323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 38492387 - 38492465
Alignment:
Q  160 tgaattcaagtgaattgatgatgttgttgtgttgaattagcatgaatgaattttctgttttgaactataagttttggat 238  Q
    |||||| |||||||||||||||||||||||||||| ||||  |||||||| ||||||||||||||||||||||||||||    
T  38492387 tgaattgaagtgaattgatgatgttgttgtgttgagttaggttgaatgaaatttctgttttgaactataagttttggat 38492465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 18034827 - 18034781
Alignment:
Q  69 tttgaagatgatatatgtgttgttgtgattaagttgttgtgtttgat 115  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||    
T  18034827 tttgaatatgatatatgtgttgttgcgattaagttgttgtgtttgat 18034781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 9416201 - 9416145
Alignment:
Q  18 gaatgtgtgataattgttgttgagtatatgttgttgatgtgaattcatgaatttgaa 74  Q
    |||| ||||||||||||| ||| |||| ||||||||||| |||||||||||||||||    
T  9416201 gaatatgtgataattgttcttgggtatgtgttgttgatgagaattcatgaatttgaa 9416145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 24370869 - 24370735
Alignment:
Q  32 tgttgttgagtatatgttgttgatgtgaattcatgaatttgaagatgatatatgtgttgttgtgattaagttgttgtgttt-gatagttttttagaaaat 130  Q
    |||||||| |||||||||| |||||  || ||||||| | |  ||||||| |||||| |||||| |||||||||||||||| | |  |||||   |||||    
T  24370869 tgttgttgggtatatgttggtgatgataagtcatgaactgggtgatgataaatgtgtggttgtggttaagttgttgtgttttggtgatttttgtaaaaat 24370770  T
Q  131 ggatcaagaatggagaagcttgatgttggtgaatt 165  Q
    ||||||| | |||||||| ||||| ||| ||||||    
T  24370769 ggatcaaaattggagaaggttgattttgatgaatt 24370735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 24850756 - 24850903
Alignment:
Q  18 gaatgtgtgataattgttgttgagtatatgttgttgatgtgaattcatgaatttgaagatgatatatgtgttgttgtgattaagttgttgtg-tttgata 116  Q
    |||| ||||||||||||||||  || ||||||||||||| ||||| ||||| |||||||||||| |||||  ||| ||| |||||||| ||| ||| ||     
T  24850756 gaatatgtgataattgttgttaggtttatgttgttgatgagaatttatgaaattgaagatgataaatgtgaagtt-tgaataagttgtggtgtttttatg 24850854  T
Q  117 gttttttagaaaatggatcaagaatggagaagcttgatgttggtgaatt 165  Q
     ||||| ||||||||| | ||||||| ||||| ||||| ||| ||||||    
T  24850855 atttttgagaaaatgggtaaagaatgaagaagtttgattttgatgaatt 24850903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 17300837 - 17300886
Alignment:
Q  32 tgttgttgagtatatgttgttgatgtgaattcatgaatttgaagatgata 81  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  17300837 tgttgttgggtatatgttgttgatgagaattcatgaatttgaagatgata 17300886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 30189497 - 30189618
Alignment:
Q  33 gttgttgagtatatgttgttgatgtgaattcatgaatttgaagatgatatatgtgttgttgtgattaagttgttgtgtttgatagttttttagaaaatgg 132  Q
    ||||||| ||||| |||||||||| |||||| |||||| |  ||| ||| ||||||||||||| |||||||||||||||| ||   ||||  ||||||||    
T  30189497 gttgttgggtataggttgttgatgagaattcgtgaattgggtgataataaatgtgttgttgtggttaagttgttgtgttttatgacttttgtgaaaatgg 30189596  T
Q  133 atcaagaatggagaagcttgat 154  Q
     | || |||||||||| |||||    
T  30189597 gttaaaaatggagaagtttgat 30189618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 17287962 - 17288007
Alignment:
Q  32 tgttgttgagtatatgttgttgatgtgaattcatgaatttgaagat 77  Q
    ||||||| |||| || ||||||||| ||||||||||||||||||||    
T  17287962 tgttgttaagtacatcttgttgatgagaattcatgaatttgaagat 17288007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 2516 - 2585
Alignment:
Q  18 gaatgtgtgataattgttgttgagtatatgttgttgatgtgaattcatgaatttgaagatgatatatgtg 87  Q
    |||| |||||||||||||||||  ||||| ||||||||| ||||| |||||||||||||||||| |||||    
T  2516 gaatatgtgataattgttgttggatatatcttgttgatgggaatttatgaatttgaagatgataaatgtg 2585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 10710348 - 10710425
Alignment:
Q  34 ttgttgagtatatgttgttgatgtgaattcatgaatttgaagatgatatatgtgttgttgtgattaagttgttgtgttt 112  Q
    |||||| |||||| ||||||||| |||||||||||||||| |||||||  ||||  ||| || ||||||||||||||||    
T  10710348 ttgttgggtatattttgttgatgagaattcatgaatttgatgatgataattgtgaggtt-tggttaagttgttgtgttt 10710425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University