View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_54 (Length: 262)
Name: NF19289_low_54
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 47652940 - 47652704
Alignment:
| Q |
11 |
cacagaaattgggtggtgaaagaaaggaaaataagagatatgatatcacatcaaaggaaggaaagttcattcacggatatacaaaattacaaaaactaag |
110 |
Q |
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| T |
47652940 |
cacagaaattgggtggtgaaagaaaggaaaataagagatatgatatcacatcaaaggaaggaaagttcattcacggatatacaaaattacaaaaactaag |
47652841 |
T |
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| Q |
111 |
aaaactttataaagtctttatcccatcacggacatgcaaacaccaatattacaatacatcacaatcagagagacatgtacagtagctactactctgaatc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47652840 |
aaaactttataaagtctttatcccatcacggacatgcaaacaccaatattacaatacatcacaatcagagagacatgtacagtagctactactctgaatc |
47652741 |
T |
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| Q |
211 |
tttctctattctttccccattctcttaacaaactttt |
247 |
Q |
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| T |
47652740 |
tttctctattctttccccattctcttaacaaactttt |
47652704 |
T |
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