View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_55 (Length: 259)
Name: NF19289_low_55
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_55 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 111 - 244
Target Start/End: Original strand, 4412489 - 4412621
Alignment:
| Q |
111 |
gaaacaacatatgaaattttgttgaaaagatgggctcaacgttcatttgaagtgcaatacnnnnnnnngcaagatccttactttttgtaaaatcttcttt |
210 |
Q |
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| T |
4412489 |
gaaacaacatatgaaattttgttgaaaagatgggctcaacgttcatttgaagtgcaatac-tttttttgcaagatccttactttttgtaaaatcttcttt |
4412587 |
T |
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| Q |
211 |
taatattttaaattttgctcttctcccagcacat |
244 |
Q |
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| T |
4412588 |
taatattttgaattctgctctttacccagcacat |
4412621 |
T |
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Target: scaffold0103 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 1868 - 1831
Alignment:
| Q |
130 |
tgttgaaaagatgggctcaacgttcatttgaagtgcaa |
167 |
Q |
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| T |
1868 |
tgttgaaaagatgggctcaaccttcatttcaagtgcaa |
1831 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 2638141 - 2638178
Alignment:
| Q |
130 |
tgttgaaaagatgggctcaacgttcatttgaagtgcaa |
167 |
Q |
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| T |
2638141 |
tgttgaaaagatgggctcaaccttcatttcaagtgcaa |
2638178 |
T |
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