View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_56 (Length: 256)
Name: NF19289_low_56
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 238
Target Start/End: Original strand, 10243496 - 10243726
Alignment:
| Q |
12 |
atgaaagaaatgttgatagttggaatggcatgtttatgggttaattgcgtgcagaatgatttgtacaagtttgtgtatcatatggaaactgaagtgctac |
111 |
Q |
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| T |
10243496 |
atgaaagaaatgttgatagttggaatggcatgtttatgggttaattacatgcagaatgatttgtacaagtttgtgtatcatatggaaactgaagtgctac |
10243595 |
T |
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| Q |
112 |
cacatgaatcactacttgaaaaattaagaattgctttgtggcatttctaccttttcaatcatg----aactaagtaggttgtacatacacatgttaaata |
207 |
Q |
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| T |
10243596 |
cacatgaatcactacttgaaaaattaagaattgctttgtggcagttctaccttttcaatcatgaactaactaagtaggttgtacatacacatgttaaata |
10243695 |
T |
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| Q |
208 |
tgttgaatggaaacttttaaaatatatatac |
238 |
Q |
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| T |
10243696 |
tgttgaatggaaacttttaaaatatatatac |
10243726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 10233019 - 10233241
Alignment:
| Q |
14 |
gaaagaaatgtt-gatagttggaatggcatgtttatgggttaattgcgtgcagaatgatttgtacaagtttgtgtatcatatggaaactgaagtgctacc |
112 |
Q |
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| T |
10233019 |
gaaagaaatgtttgatagttggaaagccatgtctatgggtta----catgcagaatggtttgtacaagtttgagtatcatatggcagctggagtgctac- |
10233113 |
T |
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| Q |
113 |
acatgaatcactacttgaaaaattaagaattgctttgtggcatttctaccttttcaatcatgaactaa--------gtaggttgtacatacacatgttaa |
204 |
Q |
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| T |
10233114 |
acatgaatcactacttgaaaaattaagaattgc-ttgtggtagttctaccttttcaaccatgaactaactaagtacgtaggttgaaaatacacatgttaa |
10233212 |
T |
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| Q |
205 |
atatgttgaatggaaacttttaaaatata |
233 |
Q |
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| T |
10233213 |
agatacttaatggaagcttttaaaatata |
10233241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 233
Target Start/End: Original strand, 10224858 - 10224983
Alignment:
| Q |
111 |
ccacatgaatcactacttgaaaaattaagaattgctttgtggcatttctaccttttcaatcatgaact----aagtaggttgtacatacacatgttaaat |
206 |
Q |
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||||||||| |||| ||||||||| |||||||||||| |||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
10224858 |
ccacatgaaccactgcttgaaaaactaagaattgctt-gtggcagttctaacttttcaagcatgaactaactaagtaggttgtacatacacatgttaaag |
10224956 |
T |
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| Q |
207 |
atgttgaatggaaacttttaaaatata |
233 |
Q |
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| T |
10224957 |
atgctgaatggaagcttttaaaatata |
10224983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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