View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19289_low_57 (Length: 255)
Name: NF19289_low_57
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_57 |
 | |
|
| [»] chr8 (12 HSPs) |
| |
|
| [»] scaffold0363 (1 HSPs) |
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|
Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 6310526 - 6310289
Alignment:
| Q |
18 |
ggactttggggtatgggaggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaatatgaaggcagttgcttcttagaaaagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6310526 |
ggactttggggtatgggaggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaatatgaaggcagttgcttcttagaaaagg |
6310427 |
T |
|
| Q |
118 |
tgacagaagtatcaaagagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaat |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6310426 |
taacagaagtatcaaagagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaat |
6310327 |
T |
|
| Q |
218 |
accatcaatgatcatgagaagactcaaacgcatgaaat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6310326 |
accatcaatgatcatgagaagactcaaacgcatgaaat |
6310289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 32633312 - 32633549
Alignment:
| Q |
18 |
ggactttggggtatgggaggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaatatgaaggcagttgcttcttagaaaagg |
117 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||| | |
|
|
| T |
32633312 |
ggactttggggcatggggggcataggtaagacaacccttgctgctgctttgtttcaaagggtctctttcaagtatgaaggcagttgcttcttagaaaatg |
32633411 |
T |
|
| Q |
118 |
tgacagaagtatcaaagagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaat |
217 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||| || |||||||||||||||||| |||||||| |||||||||||||||||||| || ||||| |||| |
|
|
| T |
32633412 |
tgacagaagtatcaaaaaggcatggaatcaatttcatatgcaacaaacttctttctaagttactaagggaagatcttgatattgaatctgccaaagtaat |
32633511 |
T |
|
| Q |
218 |
accatcaatgatcatgagaagactcaaacgcatgaaat |
255 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32633512 |
accatccatgatcatgagaagactcaaacgcatgaaat |
32633549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 5608095 - 5607858
Alignment:
| Q |
18 |
ggactttggggtatgggaggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaatatgaaggcagttgcttcttagaaaagg |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| || |||| |
|
|
| T |
5608095 |
ggactttggggtatgggaggcataggtaagacaacccttgccactgctatgtttcaaagggtctctttcaaatatgatggcagttgcttctttgagaagg |
5607996 |
T |
|
| Q |
118 |
tgacagaagtatcaaagagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaat |
217 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| ||||| |||| |
|
|
| T |
5607995 |
tgacagaagtatcaaaaagtcatggaatcaattacacatgcaacaaacttctttgtaagttactaaaagaagatcttgatattgacactcccaaactaat |
5607896 |
T |
|
| Q |
218 |
accatcaatgatcatgagaagactcaaacgcatgaaat |
255 |
Q |
| |
|
| |||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
5607895 |
atcatccatgatcagaagaagactcaaaagcatgaaat |
5607858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 5627275 - 5627512
Alignment:
| Q |
18 |
ggactttggggtatgggaggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaatatgaaggcagttgcttcttagaaaagg |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| || |||| |
|
|
| T |
5627275 |
ggactttggggtatgggaggcataggtaagacaacccttgccactgctatgtttcaaagggtctctttcaaatatgatggcagttgcttctttgagaagg |
5627374 |
T |
|
| Q |
118 |
tgacagaagtatcaaagagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaat |
217 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| ||||| |||| |
|
|
| T |
5627375 |
tgacagaagtatcaaaaagtcatggaatcaattacacatgcaacaaacttctttgtaagttactaaaagaagatcttgatattgacactcccaaactaat |
5627474 |
T |
|
| Q |
218 |
accatcaatgatcatgagaagactcaaacgcatgaaat |
255 |
Q |
| |
|
| |||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
5627475 |
atcatccatgatcagaagaagactcaaaagcatgaaat |
5627512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 5549838 - 5550071
Alignment:
| Q |
22 |
tttggggtatgggaggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaatatgaaggcagttgcttcttagaaaaggtgac |
121 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| || |
|
|
| T |
5549838 |
tttggggtatgggaggcattggtaagacaacccttgccactgctatgtttcaaagggtctctttcaaatatgatggcagttgcttctttgaaaaggttac |
5549937 |
T |
|
| Q |
122 |
agaagtatcaaagagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaatacca |
221 |
Q |
| |
|
|||||||||||| || | ||| ||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| ||||| ||||| || |
|
|
| T |
5549938 |
agaagtatcaaaaagtcgtggaatcaattacacatgcaacaaacttctttctaagttactaaaagaagatcttgatattgacactcccaaactaatatca |
5550037 |
T |
|
| Q |
222 |
tcaatgatcatgagaagactcaaacgcatgaaat |
255 |
Q |
| |
|
|| ||||||| |||||||||||| ||||||||| |
|
|
| T |
5550038 |
tccatgatcagaagaagactcaaaagcatgaaat |
5550071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 14404766 - 14404999
Alignment:
| Q |
22 |
tttggggtatgggaggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaatatgaaggcagttgcttcttagaaaaggtgac |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||| |||||||||||||| ||||| || ||||||||||| |
|
|
| T |
14404766 |
tttggggtatgggaggcacaggtaagacaacccttgcttctattctgtttcaaaggttctctttcaaatatgaaggcagctgcttgtttgaaaaggtgac |
14404865 |
T |
|
| Q |
122 |
agaagtatcaaagagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaatacca |
221 |
Q |
| |
|
||||||||| || || ||||| ||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| | | ||||| |||||||| |
|
|
| T |
14404866 |
agaagtatcgaaaaggcatggaatcaattacgcgtgcaacaaacttctttccaagttactaagggaagatcttgatattgacagtcccaaactaatacca |
14404965 |
T |
|
| Q |
222 |
tcaatgatcatgagaagactcaaacgcatgaaat |
255 |
Q |
| |
|
|| ||||||| |||||||||||| ||||||||| |
|
|
| T |
14404966 |
tctatgatcagaagaagactcaaaagcatgaaat |
14404999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 5571417 - 5571642
Alignment:
| Q |
18 |
ggactttggggtatgggaggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaatatgaaggcagttgcttcttagaaaagg |
117 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||| || |
|
|
| T |
5571417 |
ggactttggggaatgggaggcactggtaagacaactcttgctgctgctatgtttcaaaggttctctttcaaatatgaaggcaattgcttcttagaaaggg |
5571516 |
T |
|
| Q |
118 |
tgacagaagtatcaaagagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaat |
217 |
Q |
| |
|
|||||||||| ||||| | ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| ||| ||||| |||| |
|
|
| T |
5571517 |
tgacagaagtttcaaaaaagcatggaatcaattacacgtgcaacaaacttctttccaagttactaggggaagatcttcgtattgacactcccaaagtaat |
5571616 |
T |
|
| Q |
218 |
accatcaatgatcatgagaagactca |
243 |
Q |
| |
|
||| | ||||||| ||||||||||| |
|
|
| T |
5571617 |
cccagccatgatcaagagaagactca |
5571642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 13164930 - 13165163
Alignment:
| Q |
22 |
tttggggtatgggaggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaatatgaaggcagttgcttcttagaaaaggtgac |
121 |
Q |
| |
|
||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||| | | ||||||||| ||||||||||||||| ||||| |
|
|
| T |
13164930 |
tttggggaatggggggcacaggcaagacaacccttgctgctgccatgtttcaaagagtctcttctcactatgaaggccattgcttcttagaaaatgtgac |
13165029 |
T |
|
| Q |
122 |
agaagtatcaaagagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaatacca |
221 |
Q |
| |
|
|||| |||| | | ||||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||| |||||||| |
|
|
| T |
13165030 |
agaacaatcagaaaagcatggaatcaatgacacatgcaacaaacttctttccaagttactaggggaagaccttgatattaccactctcaaagtaatacca |
13165129 |
T |
|
| Q |
222 |
tcaatgatcatgagaagactcaaacgcatgaaat |
255 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||| |
|
|
| T |
13165130 |
tccatgatcaggagaagactcaaacgcatgaaat |
13165163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 12188675 - 12188443
Alignment:
| Q |
22 |
tttggggtatgggaggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaatatgaaggcagttgcttcttagaaaaggtgac |
121 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||||||||||| || ||||| | ||| |||| | ||||||||| ||||||||||||||||| || || |
|
|
| T |
12188675 |
tttggggcatgggaggcataggaaagacaacccttgctgctgccatatttcagaaggtatcttccagatatgaaggtagttgcttcttagaaaatgtcac |
12188576 |
T |
|
| Q |
122 |
agaagtatcaaagagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaatacca |
221 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||| ||||| ||||||||| ||| |||| ||||||||||| ||||||| ||| | ||| ||||| || |
|
|
| T |
12188575 |
agaagaatcaaagagacatgggctcagttacacatacaacagacttctttctaagctactaggggaagatcttcatattgagactcctaaagtaatatca |
12188476 |
T |
|
| Q |
222 |
tcaatgatcatgagaagactcaaacgcatgaaa |
254 |
Q |
| |
|
|| ||| | |||| ||||||||||||||||||| |
|
|
| T |
12188475 |
tctatggttatgaaaagactcaaacgcatgaaa |
12188443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 12433103 - 12432871
Alignment:
| Q |
22 |
tttggggtatgggaggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaatatgaaggcagttgcttcttagaaaaggtgac |
121 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||||||||||| || ||||| | ||| |||| | ||||||||| ||||||||||||||||| || || |
|
|
| T |
12433103 |
tttggggcatgggaggcataggaaagacaacccttgctgctgccatatttcagaaggtatcttccagatatgaaggtagttgcttcttagaaaatgtcac |
12433004 |
T |
|
| Q |
122 |
agaagtatcaaagagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaatacca |
221 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||| ||||| ||||||||| ||| |||| ||||||||||| ||||||| ||| | ||| ||||| || |
|
|
| T |
12433003 |
agaagaatcaaagagacatgggctcagttacacatacaacagacttctttctaagctactaggggaagatcttcatattgagactcctaaagtaatatca |
12432904 |
T |
|
| Q |
222 |
tcaatgatcatgagaagactcaaacgcatgaaa |
254 |
Q |
| |
|
|| ||| | |||| ||||||||||||||||||| |
|
|
| T |
12432903 |
tctatggttatgaaaagactcaaacgcatgaaa |
12432871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 12177354 - 12177122
Alignment:
| Q |
22 |
tttggggtatgggaggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaatatgaaggcagttgcttcttagaaaaggtgac |
121 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||||||||||| || ||||| | ||| |||| | |||||||| ||||||||| ||||||| || || |
|
|
| T |
12177354 |
tttggggcatgggaggcataggaaagacaacccttgctgctgccatatttcagaaggtatcttccatgtatgaaggtagttgcttcctagaaaatgtcac |
12177255 |
T |
|
| Q |
122 |
agaagtatcaaagagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaatacca |
221 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||| ||||| ||||||||| |||||||| ||||||||||| ||||||| ||| | ||| ||||| || |
|
|
| T |
12177254 |
agaagaatcaaagagacatgggctcagttacacatacaacagacttctttctaagttactaggggaagatcttcatattgagactcctaaagtaatatca |
12177155 |
T |
|
| Q |
222 |
tcaatgatcatgagaagactcaaacgcatgaaa |
254 |
Q |
| |
|
|| ||| | |||| ||||||||||||||||||| |
|
|
| T |
12177154 |
tctatggttatgaaaagactcaaacgcatgaaa |
12177122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 12421782 - 12421550
Alignment:
| Q |
22 |
tttggggtatgggaggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaatatgaaggcagttgcttcttagaaaaggtgac |
121 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||||||||||| || ||||| | ||| |||| | |||||||| ||||||||| ||||||| || || |
|
|
| T |
12421782 |
tttggggcatgggaggcataggaaagacaacccttgctgctgccatatttcagaaggtatcttccatgtatgaaggtagttgcttcctagaaaatgtcac |
12421683 |
T |
|
| Q |
122 |
agaagtatcaaagagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaatacca |
221 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||| ||||| ||||||||| |||||||| ||||||||||| ||||||| ||| | ||| ||||| || |
|
|
| T |
12421682 |
agaagaatcaaagagacatgggctcagttacacatacaacagacttctttctaagttactaggggaagatcttcatattgagactcctaaagtaatatca |
12421583 |
T |
|
| Q |
222 |
tcaatgatcatgagaagactcaaacgcatgaaa |
254 |
Q |
| |
|
|| ||| | |||| ||||||||||||||||||| |
|
|
| T |
12421582 |
tctatggttatgaaaagactcaaacgcatgaaa |
12421550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 14087 - 13854
Alignment:
| Q |
22 |
tttggggtatgggaggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaatatgaaggcagttgcttcttagaaaaggtgac |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||| |||||||||||||| ||||| || ||||||||||| |
|
|
| T |
14087 |
tttggggtatgggaggcacaggtaagacaacccttgcttctattctgtttcaaaggttctctttcaaatatgaaggcagctgcttgtttgaaaaggtgac |
13988 |
T |
|
| Q |
122 |
agaagtatcaaagagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaattaatacca |
221 |
Q |
| |
|
||||||||| || || ||||| ||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| | | ||||| |||||||| |
|
|
| T |
13987 |
agaagtatcgaaaaggcatggaatcaattacgcgtgcaacaaacttctttccaagttactaagggaagatcttgatattgacagtcccaaactaatacca |
13888 |
T |
|
| Q |
222 |
tcaatgatcatgagaagactcaaacgcatgaaat |
255 |
Q |
| |
|
|| ||||||| |||||||||||| ||||||||| |
|
|
| T |
13887 |
tctatgatcagaagaagactcaaaagcatgaaat |
13854 |
T |
|
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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 191
Target Start/End: Complemental strand, 19493062 - 19492906
Alignment:
| Q |
35 |
aggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaatatgaaggcagttgcttcttagaaaaggtgacagaagtatcaaag |
134 |
Q |
| |
|
||||| |||||||||| || ||| ||||||||||||||||| |||||| |||||| |||| | |||||||||||||||||| |||||| |||||| |
|
|
| T |
19493062 |
aggcataggtaagacagccattgttgctgctatgtttcaaaatttctcttgcaaatatcaaggtacctgcttcttagaaaaggtggcagaagaatcaaaa |
19492963 |
T |
|
| Q |
135 |
agacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagat |
191 |
Q |
| |
|
|| |||| ||||||| ||| | || |||||| |||||| |||||| |||||||| |
|
|
| T |
19492962 |
aggaatggaatcaatttcacttataaaaaacttgtttccacattactcggggaagat |
19492906 |
T |
|
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