View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19289_low_6 (Length: 629)
Name: NF19289_low_6
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 566; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 10 - 613
Target Start/End: Original strand, 44660842 - 44661449
Alignment:
| Q |
10 |
attattctcattctcgtagtcactaatacattaatttacttagttttttcatgtttactccctctacctctataaatagatacgagtgccaaatacaagt |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44660842 |
attattctgattctcgtagtcactaatacattaatttacttagttttttcatgtttactccctctacctctataaatagatacgagtgccaaatacaagt |
44660941 |
T |
|
| Q |
110 |
ttgttcattaacaggatagtaaattcaggtgaagattgtagcaagcagtaaacatgaacaagacacgctttggatttttcttcattttgcttattctcct |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44660942 |
ttgttcattaacaggatagtaaattcaggtgaagattgtagcaagcagtaatcatgaacaagacacgctttggatttttcttcattttgcttattctcct |
44661041 |
T |
|
| Q |
210 |
tgcttctcgtaagtcttttaagtggcatatacatatgtagttaacgaaatctattgtttttagtaaaatatgtttatattaatcatattaatgacctatt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44661042 |
tgcttctcgtaagtcttttaagtggcatatacatatgtagttaacgaaatctattgtttttagtaaaatatgtttatattaatcatattaatgagctatt |
44661141 |
T |
|
| Q |
310 |
gataaatcattgcagagatgatggtgcaaactgaaggaagacactgtgagtcaaagagccatcgattcaaaggaatgtgtatgagtgatcataactgtgc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44661142 |
gataaatcattgcagagatgatggtgcaaactgaaggaagacactgtgagtcaaagagccatcgattcaaaggaatgtgtatgagtgatcataactgtgc |
44661241 |
T |
|
| Q |
410 |
ttcagtttgtcatgttgaaggttttccaggtggtaattgcaggggattccgtagacgttgcttctgcaaaaagcgttgttaacttttatcgttggtgcaa |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44661242 |
ttcagtttgtcatgttgaaggttttccaggtggtaattgcaggggattccgtagacgttgcttctgcaaaaagcgttgttaacttttatagttggtgcaa |
44661341 |
T |
|
| Q |
510 |
atgcaaaccccttataatcacttatgtgtcttgttttattttcttaata--ctcctaatgc--ttttggttgtgtctttggtcgtttcggtttctatttg |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44661342 |
atgcaaaccccttataatcacttatgtgtcttgttttattttcttaatactctcctaatgcttttttggttgtgtctttggtcgtttctgtttctatttg |
44661441 |
T |
|
| Q |
606 |
gttgatta |
613 |
Q |
| |
|
|||||||| |
|
|
| T |
44661442 |
gttgatta |
44661449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 44650857 - 44650788
Alignment:
| Q |
157 |
gtaaacatgaacaagacacgctttggatttttcttcattttgcttattctccttgcttctcgtaagtctt |
226 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
44650857 |
gtaatcatgaacaagacacgctttggggttttattcattttgtttattctccttgcttctagtaagtctt |
44650788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 44653851 - 44653915
Alignment:
| Q |
162 |
catgaacaagacacgctttggatttttcttcattttgcttattctccttgcttctcgtaagtctt |
226 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| | |||||||| ||| ||| | ||||||||| |
|
|
| T |
44653851 |
catgaacaaagctcgctttggatttttcttcattctacttattcttcttacttttggtaagtctt |
44653915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University