View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_63 (Length: 245)
Name: NF19289_low_63
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 54280628 - 54280405
Alignment:
| Q |
8 |
cgataaactctgttgacagataaaaccacgcataacaattgaacaaaacaatctaactaaccagttccataccctatcttgtatataactcctaaggtac |
107 |
Q |
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| T |
54280628 |
cgataaactctgttgacagataaaaccacgcataacaattgaacaaaacaatctaactaaccagttccataccctatcttgtatctaactcctaaggtac |
54280529 |
T |
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| Q |
108 |
tcttgggcaagaagaaaggtatgagactaatataattccacgtgaaagtagttcatttttcaaataacgcaccaaaaagtaaacaaatacgaaatacagt |
207 |
Q |
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| T |
54280528 |
tattgggcaagaagaaaggtatgagactaatataattccatgtgaaagtagttcatttttcaaataacgcaccaaaaagtaaacaaatacgaaatacagt |
54280429 |
T |
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| Q |
208 |
tgtaagccaatgaagaatgatgat |
231 |
Q |
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|||||||||||||||||||||||| |
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| T |
54280428 |
tgtaagccaatgaagaatgatgat |
54280405 |
T |
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