View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_64 (Length: 245)
Name: NF19289_low_64
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 54949056 - 54948816
Alignment:
| Q |
1 |
aatggagagtaaactttgagtattgctttaatttgttgtagattaggcatgatctttgaaatggaattaaggtttttcaaacatgaaatagatggagggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54949056 |
aatggagagtaaactttgagtattgctttaatttgttgtagattaggcatgatctttgaaatggaattaaggtttttcaaacatgaaatagatggagggt |
54948957 |
T |
|
| Q |
101 |
tagtaagtctaccattttgtgcaacaaaagtacctacatgaatgcctcgagcttgagttcctctacttattggtctaacgtcatagaaattgaagtcttc |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54948956 |
tagtaagtctaccattttgtgcaacaaaagtgcctacatgaatgcctcgagcttgagttcctctacttattggtctaacgtcatagaaattgaagtcttc |
54948857 |
T |
|
| Q |
201 |
ggattcccaaatcaacgaagaagtttcgcatttctctgtga |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
54948856 |
ggattcccaaatcaacgaagaagtttcgcatttctctgtga |
54948816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 26355999 - 26355759
Alignment:
| Q |
1 |
aatggagagtaaactttgagtattgctttaatttgttgtagattaggcatgatctttgaaatggaattaaggtttttcaaacatgaaatagatggagggt |
100 |
Q |
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|||||||||||||||||||||||||| | ||||||| |||||| |||||||| || ||||| ||||| || ||||||||||||||||||||||||||| |
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| T |
26355999 |
aatggagagtaaactttgagtattgcatcaatttgtactagatttggcatgattttggaaattgaattgagatttttcaaacatgaaatagatggaggga |
26355900 |
T |
|
| Q |
101 |
tagtaagtctaccattttgtgcaacaaaagtacctacatgaatgcctcgagcttgagttcctctacttattggtctaacgtcatagaaattgaagtcttc |
200 |
Q |
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| T |
26355899 |
tattagtcccaccattttgtgcaacaaaggcgccaacgtgaacaccgggagcttgagttcctctattgatcggtctaacatcataaaaattgaagtcgtt |
26355800 |
T |
|
| Q |
201 |
ggattcccaaatcaacgaagaagtttcgcatttctctgtga |
241 |
Q |
| |
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||| |||| ||| ||||||||| ||||||| ||||||| |
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| T |
26355799 |
tgatccccagatccacgaagaagactcgcattggtctgtga |
26355759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26348429 - 26348651
Alignment:
| Q |
1 |
aatggagagtaaactttgagtattgctttaatttgttgtagattaggcatgatctttgaaatggaattaaggtttttcaaacatgaaatagatggagggt |
100 |
Q |
| |
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|||||||||||||||| ||| ||||| | |||||||| | |||||||||||| | |||||| ||||| || || |||||||||||||| |||||||||| |
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| T |
26348429 |
aatggagagtaaacttggagcattgcctcaatttgttttttattaggcatgatttgtgaaatagaattgagattcttcaaacatgaaattgatggagggt |
26348528 |
T |
|
| Q |
101 |
tagtaagtctaccattttgtgcaacaaaagtacctacatgaatgcctcgagcttgagttcctctacttattggtctaacgtcatagaaattgaagtcttc |
200 |
Q |
| |
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||||| | ||||||||| |||| || ||||| || ||| || ||||||||||||||||| | ||||||||||| | ||||||||||||| | |
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| T |
26348529 |
tagtattcccaccattttgagcaaagaaggtaccgactcgaacaccaggagcttgagttcctctattgattggtctaacattgtagaaattgaagttgtt |
26348628 |
T |
|
| Q |
201 |
ggattcccaaatcaacgaagaag |
223 |
Q |
| |
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||| |||||||| ||||||||| |
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| T |
26348629 |
tgatccccaaatccacgaagaag |
26348651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 197
Target Start/End: Original strand, 26333236 - 26333392
Alignment:
| Q |
41 |
gattaggcatgatctttgaaatggaattaaggtttttcaaacatgaaatagatggagggttagtaagtctaccattttgtgcaacaaaagtacctacatg |
140 |
Q |
| |
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||||||||||||| | |||||| ||||| || || |||||||| ||||| ||||||||||||||| | ||||||||| ||||| || || || || | |
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| T |
26333236 |
gattaggcatgatttgtgaaatagaattgagattcttcaaacacgaaattgatggagggttagtattcccaccattttgagcaacgaaggtgccaacgcg |
26333335 |
T |
|
| Q |
141 |
aatgcctcgagcttgagttcctctacttattggtctaacgtcatagaaattgaagtc |
197 |
Q |
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|| || |||||| | |||||||| | |||||||||||||| |||||||| ||||| |
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| T |
26333336 |
aacaccgggagctttacttcctctattaattggtctaacgtcgtagaaatttaagtc |
26333392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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