View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_7 (Length: 620)
Name: NF19289_low_7
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 607
Target Start/End: Original strand, 29202737 - 29203344
Alignment:
| Q |
1 |
taacatgtcatctagatgctctgaagatatgcttgaccttgctcctgacaatacttttgttgcggatgatctaaacctttcacgggaaatatcatgcgaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29202737 |
taacatgtcatctagatgctctgaagatatgcttgaccttgctcctgacaatacttttgttgcggatgatctaaacctttcacgggaaatatcatgcgag |
29202836 |
T |
|
| Q |
101 |
gctcatagcttaaaacctgatcatggcgcaaagatatcttctcctgaaagcttgacaccgcgatcaccgttgattacacccagaacaagtcagatagaaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29202837 |
gctcatagcttaaaacctgatcatggcgcaaagatatcttctcctgaaagcttgacaccgcgatcaccgttgattacacccagaacaagtcagatagaaa |
29202936 |
T |
|
| Q |
201 |
tgttactaagtgtaagtggaagaagaccaatatctgaacttgagagttacgaccaggtatacacttccatatggttattcttcatattaaatcataacac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29202937 |
tgttactaagtgtaagtggaagaagaccaatatctgaacttgagagttacgaccaggtatacacttccatatggttattcttcatattaaatcataacac |
29203036 |
T |
|
| Q |
301 |
gcacnnnnnnnngtacactgcatgaaagcatatatcattaacttgtatatattataatccatgagattcatctctgaaatttttgtctgattcattttct |
400 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29203037 |
gcacaaaaaaaagtacactgcatgaaagcatatatcattaacttgtatatattataatccatgagattcatctctgaaatttttgtctgattcattttct |
29203136 |
T |
|
| Q |
401 |
gaatttgcgacatgctactatactagtgatacactcttttgaatactcacttgaacacattctttgtgattggtc-nnnnnnnnnnaaaaaattcaagat |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29203137 |
gaatttgcgacatgctactatactagtgatacactcttttgaatactcacttgaacacattctttgtgattggtctttttttttttttaaaattcaagat |
29203236 |
T |
|
| Q |
500 |
ggttttctccttaattgatgaccttttaaaaagtgttcacttttgaaaaaatgaatgcaagagtgggggcttccaatcgtccattcctctctgaactttt |
599 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29203237 |
ggttttctccttaattgatgaccttttaaaaagtgttcacttttgaaaaaatgaatgcaagagtgggggcttccaatcgtccattcctctctgaactttt |
29203336 |
T |
|
| Q |
600 |
atattgat |
607 |
Q |
| |
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|||||||| |
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| T |
29203337 |
atattgat |
29203344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 607
Target Start/End: Complemental strand, 12649150 - 12648532
Alignment:
| Q |
1 |
taacatgtcatctagatgctctgaagatatgcttgaccttgctcctgacaatacttttgttgcggatgatctaaacctttcacgggaaatatcatgcgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12649150 |
taacatgtcatctagatgctctgaagatatgcttgaccttgctcctgacaatacttttgttgcggatgatctaaacctttcacgggaaatatcatgcgag |
12649051 |
T |
|
| Q |
101 |
gctcatagcttaaaacctgatcatggcgcaaagatatcttctcctgaaagcttgacaccgcgatcaccgttgattacacccagaacaagtcagatagaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12649050 |
gctcatagcttaaaacctgatcatggcgcaaagatatcttctcctgaaagcttgacaccgcgatcaccgttgattacacccagaacaagtcagatagaaa |
12648951 |
T |
|
| Q |
201 |
tgttactaagtgtaagtggaagaagaccaatatctgaacttgagagttacgaccaggtatacacttccatatggttattcttcatattaaatcataacac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
12648950 |
tgttactaagtgtaagtggaagaagaccaatatctgaacttgagagttacgaccaggtatacacttccatatggttattcttcatattaaatcattacat |
12648851 |
T |
|
| Q |
301 |
gcacnnnnnnnngtacactgcatgaaagcatatatcattaacttgtatatattataatccatgagattcatctctgaaatttttgtctgattcattttct |
400 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12648850 |
gcac-aaaaaaagtacactacatgaaagcatatatcattaacttatatatattataatccatgagattcatctctgaaatttttgtctgattcattttct |
12648752 |
T |
|
| Q |
401 |
gaatttgcgacatgctactatactagtgatacactcttttgaatactcacttgaacacattctttgtgattggtcnnnnnnnnnnaaaaaattcaagatg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
12648751 |
gaatttgcgacatgctactatactagtgatacactcttttgaatactcacttgaacacattgtttgtgattggtcttttttttaaaaaaaattcaagatg |
12648652 |
T |
|
| Q |
501 |
gttttctccttaattgatgaccttttaaaaagtgttcacttttgaaaaaatgaatgcaagag-------------tgggggcttccaatcgtccattcct |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
12648651 |
gttttctccttaattgatgaccttttaaaaagtgttcacttttgaaaaaatgaatgcaagagtgggtacaaagaatgggggcttccattcgtccattcct |
12648552 |
T |
|
| Q |
588 |
ctctgaacttttatattgat |
607 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
12648551 |
ctctgaacttttatattgat |
12648532 |
T |
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