View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19289_low_71 (Length: 237)

Name: NF19289_low_71
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19289_low_71
NF19289_low_71
[»] chr8 (2 HSPs)
chr8 (1-221)||(44736355-44736575)
chr8 (164-216)||(32151284-32151336)
[»] chr6 (5 HSPs)
chr6 (93-216)||(6402772-6402895)
chr6 (93-203)||(6603279-6603389)
chr6 (92-136)||(28934960-28935004)
chr6 (90-149)||(6426420-6426479)
chr6 (114-207)||(19632372-19632465)
[»] chr2 (1 HSPs)
chr2 (90-216)||(45245149-45245275)
[»] chr3 (2 HSPs)
chr3 (93-216)||(51113845-51113968)
chr3 (95-219)||(13470793-13470917)
[»] chr4 (6 HSPs)
chr4 (90-216)||(546822-546948)
chr4 (89-150)||(55505235-55505296)
chr4 (176-216)||(1548488-1548528)
chr4 (90-157)||(1489484-1489551)
chr4 (92-206)||(553390-553504)
chr4 (92-137)||(12121600-12121645)
[»] chr5 (1 HSPs)
chr5 (95-206)||(20478156-20478267)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44736355 - 44736575
Alignment:
Q  1 gacatgtaccagttatctctctcaatgatggtcttgatggtaccgctgagataatgctactagtagctactttatagcgacaactgatgttgatctctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44736355 gacatgtaccagttatctctctcaatgatggtcttgatggtaccgctgagataatgctactagtagctactttatagcgacaactcatgttgatctctct 44736454  T
Q  101 tagttgtgtacaattttctacaacatgtttcactcccttcgttgtgacattataacaatagctcaataccagttacaaaagcccacagcaactctttgag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44736455 tagttgtgtacaattttctacaacatgtttcactcccttcgttgtgacattataacaatagctcaataccagttacaaaagcccacaacaactctttgag 44736554  T
Q  201 atcacaatgagtgttttattt 221  Q
    |||||||||||||||||||||    
T  44736555 atcacaatgagtgttttattt 44736575  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 32151284 - 32151336
Alignment:
Q  164 caataccagttacaaaagcccacagcaactctttgagatcacaatgagtgttt 216  Q
    ||||| ||||| |||||||||||  ||||||||||||||||||  ||||||||    
T  32151284 caataacagttgcaaaagcccactacaactctttgagatcacatagagtgttt 32151336  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 216
Target Start/End: Original strand, 6402772 - 6402895
Alignment:
Q  93 atctctcttagttgtgtacaattttctacaacatgtttcactcccttcgttgtgacattataacaatagctcaataccagttacaaaagcccacagcaac 192  Q
    |||||||| ||||||||||| |||||||  ||||||||| |||||||   |||||||||||||||||  |||||||  |||| |||||||||||  |||     
T  6402772 atctctctcagttgtgtacagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaataatagtttcaaaagcccactacaat 6402871  T
Q  193 tctttgagatcacaatgagtgttt 216  Q
    ||||||||||||||  ||||||||    
T  6402872 tctttgagatcacatagagtgttt 6402895  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 203
Target Start/End: Complemental strand, 6603389 - 6603279
Alignment:
Q  93 atctctcttagttgtgtacaattttctacaacatgtttcactcccttcgttgtgacattataacaatagctcaataccagttacaaaagcccacagcaac 192  Q
    |||| ||| |||||| | || |||||||| |||||||||||||| |||  |||||||| |||||||||  ||||||  |||| ||||||||||   ||||    
T  6603389 atctttctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaac 6603290  T
Q  193 tctttgagatc 203  Q
    |||||||||||    
T  6603289 tctttgagatc 6603279  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 28934960 - 28935004
Alignment:
Q  92 gatctctcttagttgtgtacaattttctacaacatgtttcactcc 136  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||    
T  28934960 gatctctcttagttgtgtgcaattttctaccacatgcttcactcc 28935004  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 6426420 - 6426479
Alignment:
Q  90 ttgatctctcttagttgtgtacaattttctacaacatgtttcactcccttcgttgtgaca 149  Q
    ||||||| |||||||||||| || |||||||| || |||||||| |||||| ||||||||    
T  6426420 ttgatctttcttagttgtgtgcagttttctaccacttgtttcacacccttcattgtgaca 6426479  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 207
Target Start/End: Original strand, 19632372 - 19632465
Alignment:
Q  114 ttttctacaacatgtttcactcccttcgttgtgacattataacaatagctcaataccagttacaaaagcccacagcaactctttgagatcacaa 207  Q
    |||||||| || |||||||||||||||  ||||| ||||  |||||   ||| ||  |||| |||||||||||| ||| |||||||||||||||    
T  19632372 ttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgagatcacaa 19632465  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 216
Target Start/End: Complemental strand, 45245275 - 45245149
Alignment:
Q  90 ttgatctctcttagttgtgtacaattttctacaacatgtttcactcccttcgttgtgacattataacaatagctcaataccagttacaaaagcccacagc 189  Q
    ||||||||| | |||||||| ||||||||||| |||||||||||||||||   |||||||| |||||| |   ||||||  |||| |||||||||||  |    
T  45245275 ttgatctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgac 45245176  T
Q  190 aactctttgagatcacaatgagtgttt 216  Q
    |||||||||||||||||  ||||||||    
T  45245175 aactctttgagatcacatggagtgttt 45245149  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 216
Target Start/End: Complemental strand, 51113968 - 51113845
Alignment:
Q  93 atctctcttagttgtgtacaattttctacaacatgtttcactcccttcgttgtgacattataacaatagctcaataccagttacaaaagcccacagcaac 192  Q
    ||||||||||||| ||| || |||||||| ||||| ||||||||||||  ||||||||  |||||||   ||| || ||||| |||||||||||| ||||    
T  51113968 atctctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaac 51113869  T
Q  193 tctttgagatcacaatgagtgttt 216  Q
    |||| |||||||||  ||||||||    
T  51113868 tcttcgagatcacatagagtgttt 51113845  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 219
Target Start/End: Complemental strand, 13470917 - 13470793
Alignment:
Q  95 ctctcttagttgtgtacaattttctacaacatgtttcactcccttcgttgtgacattataacaatagctcaa-taccagttacaaaagcccacagcaact 193  Q
    ||||||||| ||||| || || ||||| ||||||||||||||||    ||||||||||| |||| || |||| ||  |||| |||||||||||| ||| |    
T  13470917 ctctcttagctgtgtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaa-agttcaagtaatagttgcaaaagcccacaacaatt 13470819  T
Q  194 ctttgagatcacaatgagtgttttat 219  Q
    ||||||||||| |  |||||||||||    
T  13470818 ctttgagatcatatagagtgttttat 13470793  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 216
Target Start/End: Original strand, 546822 - 546948
Alignment:
Q  90 ttgatctctcttagttgtgtacaattttctacaacatgtttcactcccttcgttgtgacattataacaatagctcaataccagttacaaaagcccacagc 189  Q
    |||||||||||||||| ||| || |||||||  ||||||||||||||||||  |||||||| | |||| |    || || || || |||||||||||| |    
T  546822 ttgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccacaac 546921  T
Q  190 aactctttgagatcacaatgagtgttt 216  Q
    |||||||||||||||||  ||||||||    
T  546922 aactctttgagatcacatagagtgttt 546948  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 55505296 - 55505235
Alignment:
Q  89 gttgatctctcttagttgtgtacaattttctacaacatgtttcactcccttcgttgtgacat 150  Q
    ||||||||||||||||||||| || |||||||  || |||||||||||||||  ||||||||    
T  55505296 gttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 55505235  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 1548528 - 1548488
Alignment:
Q  176 caaaagcccacagcaactctttgagatcacaatgagtgttt 216  Q
    |||||||||||| |||||||||||||||||| |||||||||    
T  1548528 caaaagcccacaacaactctttgagatcacattgagtgttt 1548488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 1489551 - 1489484
Alignment:
Q  90 ttgatctctcttagttgtgtacaattttctacaacatgtttcactcccttcgttgtgacattataaca 157  Q
    |||||||||||||||||||  || |||||||  ||||| ||||||||||||  |||||||||| ||||    
T  1489551 ttgatctctcttagttgtgcgcatttttctagcacatgcttcactcccttctctgtgacattaaaaca 1489484  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 553390 - 553504
Alignment:
Q  92 gatctctcttagttgtgtacaattttctacaacatgtttcactcccttcgttgtgacattataacaatagctcaataccagttacaaaagcccacagcaa 191  Q
    ||||||||| |||||||| || |||||||| ||||| |||||||| ||   |||||||| |  ||||||   ||| | ||||| |||||||||| | |||    
T  553390 gatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcactacaataaaacaacaacagttgcaaaagcccagaacaa 553489  T
Q  192 ctctttgagatcaca 206  Q
    |||||||| ||||||    
T  553490 ctctttgaaatcaca 553504  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 12121645 - 12121600
Alignment:
Q  92 gatctctcttagttgtgtacaattttctacaacatgtttcactccc 137  Q
    |||||||||||||||||| || |||||||| ||||| |||||||||    
T  12121645 gatctctcttagttgtgtgcatttttctaccacatgcttcactccc 12121600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 206
Target Start/End: Complemental strand, 20478267 - 20478156
Alignment:
Q  95 ctctcttagttgtgtacaattttctacaacatgtttcactcccttcgttgtgacattataacaatagctcaataccagttacaaaagcccacagcaactc 194  Q
    |||||| |||||||| || |||||||| ||||||||| |||| ||| ||||||||||||  ||||   ||| ||  | || |||||||||||| ||| ||    
T  20478267 ctctctcagttgtgtgcagttttctacgacatgtttcgctcctttcattgtgacattatcgcaatttttcagtagtatttgcaaaagcccacaacaattc 20478168  T
Q  195 tttgagatcaca 206  Q
     |||||||||||    
T  20478167 cttgagatcaca 20478156  T

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