View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_74 (Length: 237)
Name: NF19289_low_74
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_74 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 54949401 - 54949621
Alignment:
| Q |
1 |
ttaaattagagagaataggtgaacatgttggtgactgggagcatgtgacattaagggtaagtaatttggatggtaaattatggaaagtctatttctcaca |
100 |
Q |
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| T |
54949401 |
ttaaattagagagaataggtgaacatgttggtgactgggagcatgtgacattaagggtaagtaatttggatggtaaattatggaaagtctatttctcaca |
54949500 |
T |
|
| Q |
101 |
tcataagacaggttcatgggttgattcctctcaacttgaattccaaaatgatactagcaatattgattttccaacaaaaagacctgttgttcatgcttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54949501 |
tcataagacaggttcatgggttgattcctctcaacttgaattccaaaatgatactagcaatattgattttccaacaaaaagacctgttgttcatgcttca |
54949600 |
T |
|
| Q |
201 |
ttgcatggccattcaacatat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
54949601 |
ttgcatggccattcaacatat |
54949621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 26338162 - 26337958
Alignment:
| Q |
17 |
aggtgaacatgttggtgactgggagcatgtgacattaagggtaagtaatttggatggtaaattatggaaagtctatttctcacatcataagacaggttca |
116 |
Q |
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| T |
26338162 |
aggtgaacatgttggtgattgggagcatgtgacattaagggtaagtaacttcgatggtcaattatggcatgtatacttctctcaacacaatgctggtaaa |
26338063 |
T |
|
| Q |
117 |
tgggttgattcctctcaacttgaattccaaaatgatactagcaatattgattttccaacaaaaagacctgttgttcatgcttcattgcatggccattcaa |
216 |
Q |
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| T |
26338062 |
tggattgattcatctcaacttgagttccaaagtgatgctagtagttttgattttccaacaaaaagacctattgtttatgcttctttgcatggtcatgcat |
26337963 |
T |
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| Q |
217 |
catat |
221 |
Q |
| |
|
||||| |
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| T |
26337962 |
catat |
26337958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 26332842 - 26332659
Alignment:
| Q |
16 |
taggtgaacatgttggtgactgggagcatgtgacattaagggtaagtaatttggatggtaaattatggaaagtctatttctcacatcataagacaggttc |
115 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |||||| | ||||||||||| || ||||| ||||| |
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| T |
26332842 |
taggtgaacatgttggtgattgggagcatgtgacattaagggtaagtaacttggatggtcagttatggcatgtctatttctctcaacataatggtggttc |
26332743 |
T |
|
| Q |
116 |
atgggttgattcctctcaacttgaattccaaaatgatactagcaatattgattttccaacaaaaagacctgttgttcatgcttc |
199 |
Q |
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| T |
26332742 |
atgggttgatgcatctcaacttgagtttcaaatggataatagcagttttgattttccgacacaaagacctgtggtttatgcttc |
26332659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 26348088 - 26347945
Alignment:
| Q |
3 |
aaattagagagaataggtgaacatgttggtgactgggagcatgtgacattaagggtaagtaatttggatggtaaattatggaaagtctatttctcacatc |
102 |
Q |
| |
|
||||||| || ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||| | || ||||||||||| | |
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| T |
26348088 |
aaattagggaaaataggtgaacatgttggtgattgggagcacgtgacattaagggtaagtaatttggatggtcaattatggcatgtatatttctcacaac |
26347989 |
T |
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| Q |
103 |
ataagacaggttcatgggttgattcctctcaacttgaattccaa |
146 |
Q |
| |
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|||| ||||||||| ||||||| || |||||||| |||||| |
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| T |
26347988 |
ataatcttggttcatggattgattcatcccaacttgagttccaa |
26347945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 26356338 - 26356476
Alignment:
| Q |
1 |
ttaaattagagagaataggtgaacatgttggtgactgggagcatgtgacattaagggtaagtaatttggatggtaaattatggaaagtctatttctcaca |
100 |
Q |
| |
|
||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |
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| T |
26356338 |
ttaaattagggaaaataggtgaacatattggtgattgggagcatgtgacattaagggtaagtaatttggatggtaaattatggcatttatatttctcaca |
26356437 |
T |
|
| Q |
101 |
tcataagacaggttcatgggttgattcctctcaacttga |
139 |
Q |
| |
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|||| | |||| |||| ||||||| ||||| ||||| |
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| T |
26356438 |
acatagtaaaggtgaatggattgattcttctcagcttga |
26356476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 26324912 - 26324868
Alignment:
| Q |
17 |
aggtgaacatgttggtgactgggagcatgtgacattaagggtaag |
61 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
26324912 |
aggtgaacatgtgggagactgggagcatgtgacattaagggtaag |
26324868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 28315338 - 28315286
Alignment:
| Q |
15 |
ataggtgaacatgttggtgactgggagcatgtgacattaagggtaagtaattt |
67 |
Q |
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|||||||||||| ||||||| ||||||||||| || ||||||||||||||||| |
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| T |
28315338 |
ataggtgaacatattggtgattgggagcatgtaactttaagggtaagtaattt |
28315286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 26347931 - 26347882
Alignment:
| Q |
172 |
caacaaaaagacctgttgttcatgcttcattgcatggccattcaacatat |
221 |
Q |
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||||||||||||||||||| |||||||||||||||| ||| || ||||| |
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| T |
26347931 |
caacaaaaagacctgttgtctatgcttcattgcatggtcatgcatcatat |
26347882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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