View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_76 (Length: 234)
Name: NF19289_low_76
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 39307600 - 39307398
Alignment:
| Q |
16 |
cagatgaaatgaactctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttcatcatgactacaacttttttgttaaggatggtaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39307600 |
cagatgaaatgaactctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttcatcaagactacaacttttttgttaaggatggtaa |
39307501 |
T |
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| Q |
116 |
acagtgggtaggagaatagaaagactgctggttggcattaggaatcattttgttaaggctgaaggttgaagatccatcatgacaaagatttcaaccatac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39307500 |
acagtgggtaggagaatagaaagactgctggttggcattaggaaccattttgttaaggctgaaggttgaagatccatcatgacaaagatttcaaccatac |
39307401 |
T |
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| Q |
216 |
ttg |
218 |
Q |
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||| |
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| T |
39307400 |
ttg |
39307398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 39299755 - 39299640
Alignment:
| Q |
25 |
tgaactctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttcatcatgactacaacttttttgttaaggatggtaaacagtgggt |
124 |
Q |
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||||| ||||||||||||||||||||| ||||||| | |||||||| |||| ||| |||| ||||| |||||||| | ||||||| |||||||| |
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| T |
39299755 |
tgaacactttgttgaaggctgccgatgattggttagacagtttgaatgttgtcagccattatgatcacaaccattttgttaggcatggtaagcagtgggt |
39299656 |
T |
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| Q |
125 |
aggagaatagaaagac |
140 |
Q |
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| |||| |||||||| |
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| T |
39299655 |
ggaagaaaagaaagac |
39299640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 26555484 - 26555388
Alignment:
| Q |
19 |
atgaaatgaactctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttcatcatgactacaacttttttgttaaggatggtaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||| |||||| |||| |
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| T |
26555484 |
atgaaatgaactctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgaggttgatcatgaccacaactattttgtcaaggatagtaa |
26555388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 26563461 - 26563390
Alignment:
| Q |
19 |
atgaaatgaactctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttcatcatgact |
90 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26563461 |
atgaaatgaactcttagttgaaggctgccgatgtttggttaaagagtttgaaggttgaggttcatcatgact |
26563390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 26555233 - 26555343
Alignment:
| Q |
27 |
aactctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttcatcatgactacaacttttttgttaaggatggtaaacagtgggtag |
126 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||||| ||| || ||| |
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| T |
26555233 |
aactctttgttgaaggttgccgatgtttggttaaatagtttgaaggttgaagttcatcatgactacaaccattttgtcaaggatggtaagcagcggatag |
26555332 |
T |
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| Q |
127 |
gagaatagaaa |
137 |
Q |
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| |||||||| |
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| T |
26555333 |
aaaaatagaaa |
26555343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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