View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_79 (Length: 231)
Name: NF19289_low_79
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_79 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 5982698 - 5982819
Alignment:
| Q |
86 |
tacagcgcatgcttcataaaactcttatcacatcgtaaagtatatgcatgctggcctcctctacgtacgtcaaattaaaggacactagcctttaattcac |
185 |
Q |
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| T |
5982698 |
tacagcgcatgcttcataaaactcttatcacatcgtaaagtatatgcatgctggcctcctctacgtacgtcaaattaaagtacactagcctttaattcac |
5982797 |
T |
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| Q |
186 |
caggatgtagtatacggctttt |
207 |
Q |
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|||||||||||||||||||||| |
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| T |
5982798 |
caggatgtagtatacggctttt |
5982819 |
T |
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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 5947065 - 5947131
Alignment:
| Q |
129 |
atgcatgctggcctcctctacgtacgtcaaattaaaggacactagcctttaattcaccaggatgtag |
195 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||| || | ||||||| |
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| T |
5947065 |
atgcatgctggcctcctctacctaggtcaaattaaaggacactagcctttaattgacaaagatgtag |
5947131 |
T |
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