View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_8 (Length: 580)
Name: NF19289_low_8
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 56 - 565
Target Start/End: Original strand, 42529436 - 42529957
Alignment:
| Q |
56 |
atgggaatctcagttcttggaaatacagatcaacaagtattgaatacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttt |
155 |
Q |
| |
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| T |
42529436 |
atgggaatctcagttcttggaaatacagatcaacaagtattgaatacacaaggagggccaagccggatgccggttttgatctttttcagtcagattcttt |
42529535 |
T |
|
| Q |
156 |
tgttgtaaaatttgatgatgttaatgtcaaggtcctaacctactctgcgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatac |
255 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
42529536 |
tgttgtaaaatttgatgatgttaatgtcaaggtcttaacctactctgcgcaagatagtatgttcaaggtttttgaccttaaaaactacacttttctatac |
42529635 |
T |
|
| Q |
256 |
tcgttttcatttagcaatgtt------------atcagttctggcattatgttattcatcttccaaagaagaagtgatcatattccaatcaagattatat |
343 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42529636 |
tcgttttcatttagcaatgttcaacggatcaacatcagttctggcatcatgttattcatcttccaaagaagaagtgatcatattccaatcaagattatat |
42529735 |
T |
|
| Q |
344 |
ccattgaggatggcttagttctcaaagaattcagttatctacattggaataaggaggtagacttcatagtgcaatgcaatgaaaagcttttagtcaagca |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42529736 |
ccattgaggatggcttagttctcaaagaattcagttatctacattggaataaggaggtagacttcatagtgcaatgcaatgaaaagcttttagtcaagca |
42529835 |
T |
|
| Q |
444 |
ggacaatgtcaaccttcagattcttgacttacaaagttctaagctgacgccggtagtaagcagaactgagttcatgaaaccaactatatttatccttctt |
543 |
Q |
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| T |
42529836 |
ggacaatgtcaaccttcagattcttgacttacaaagttctaagctgacgccggtagtaagcagaactgagttcatgaaaccaactatatttatccttctt |
42529935 |
T |
|
| Q |
544 |
tacaagaaagagttattcctta |
565 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
42529936 |
tacaagaaagagttattcctta |
42529957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 77 - 565
Target Start/End: Original strand, 42535179 - 42535676
Alignment:
| Q |
77 |
aatacagatcaacaagtattgaatacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtaaaatttgatgatgt |
176 |
Q |
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|||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42535179 |
aatacagatcaacacgcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgt |
42535278 |
T |
|
| Q |
177 |
taatgtcaaggtcctaacctactctgcgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatactcgttttcatttagcaatgtt |
276 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42535279 |
taatgccaaggtcctaacctactctgcgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgtt |
42535378 |
T |
|
| Q |
277 |
------------atcagttctggcattatgttattcatcttccaaagaagaagtgatcatattccaatcaagattatatccattgaggatggcttagttc |
364 |
Q |
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|||||||||||||| ||||||||||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
42535379 |
gattggatcaacatcagttctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatggcaaagttc |
42535478 |
T |
|
| Q |
365 |
tcaaagaattcagttatctacattggaataaggaggtagacttcatagtgcaatgcaatgaaaagcttttagtcaagcaggacaatgtcaaccttcagat |
464 |
Q |
| |
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||||| |||||| || |||||||| ||||| |||||||||| | || ||| ||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
42535479 |
tcaaacaattcaattgtctacattagaatagggaggtagacatgattgtg---tgcaatgaaaagcttctagtcatgcaggacaatgtcaaccttcagat |
42535575 |
T |
|
| Q |
465 |
tcttgacttacaaagttctaagctgacgccggtagtaagcagaactgagttcatgaaaccaactatatttatccttctttacaagaaagagttattcctt |
564 |
Q |
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||||||||||| ||||| |||| | | | | ||||||||||||||||||||||| ||| | | ||||||| |||| | ||||||| ||||||||||| |
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|
| T |
42535576 |
tcttgacttaccaagttttaagattatggcatcggtaagcagaactgagttcatgaacccatcaagatttatctttctatgcaagaaacagttattcctt |
42535675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 279 - 470
Target Start/End: Original strand, 27824592 - 27824786
Alignment:
| Q |
279 |
cagttctggcattatgttattcatcttccaaagaagaagtgatcatattccaatcaagattatatccattgaggatggcttagttctcaaagaattcagt |
378 |
Q |
| |
|
|||| ||||||| |||||||| || ||| | ||| ||||| |||||||||| | || ||||||||||||||||||||| ||||||||||| ||||| | |
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| T |
27824592 |
cagtcctggcatcatgttattaatattcaatagagcaagtggtcatattccactgaaaattatatccattgaggatggcacagttctcaaagcattcaat |
27824691 |
T |
|
| Q |
379 |
tatctac---attggaataaggaggtagacttcatagtgcaatgcaatgaaaagcttttagtcaagcaggacaatgtcaaccttcagattcttga |
470 |
Q |
| |
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|||||| || |||||||| |||| |||||||||| ||||| ||||||||||||| ||||||||||||| |||| |||||||| |||||||| |
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| T |
27824692 |
catctactccatcggaataagaaggtggacttcatagagcaattcaatgaaaagcttctagtcaagcaggaaaatgagaaccttcaaattcttga |
27824786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 27821896 - 27821993
Alignment:
| Q |
1 |
agcctcttctacaacaagaacaatgactgccttattacgctgtctgattacggtcatgggaatctcagttcttggaaatacagatcaacaagtattga |
98 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| |||||| ||| | | || |||| ||||||||| ||| | |||||||||||| ||||| |
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| T |
27821896 |
agcctcttctacaacaagaacaatgactcacttattacagtgtctgtttatgcttctgagaatttcagttctttgaagtgcagatcaacaaggattga |
27821993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 27822302 - 27822355
Alignment:
| Q |
211 |
agtatattcaaggtttttgatcttaaaaactacacttttctatactcgttttca |
264 |
Q |
| |
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||||||| |||||| || |||||||||||||||||||| ||||||||| ||||| |
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| T |
27822302 |
agtatatacaaggtcttcgatcttaaaaactacactttgctatactcgatttca |
27822355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 27822082 - 27822138
Alignment:
| Q |
99 |
atacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttt |
155 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| |||||| ||||| |||||||| |
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|
| T |
27822082 |
atacataaagagggccaagccggatgctggttttcctcttttccagtccgagtcttt |
27822138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 27822159 - 27822207
Alignment:
| Q |
164 |
aatttgatgatgttaatgtcaaggtcctaacctactctgcgcaagatag |
212 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||| ||||| |
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| T |
27822159 |
aatttgatgatgttaatgcaaaggtcctaacatactctgcgcaggatag |
27822207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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