View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19289_low_83 (Length: 226)
Name: NF19289_low_83
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19289_low_83 |
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Alignment Details
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 44471780 - 44471584
Alignment:
| Q |
15 |
agagatactagaatttgttatattaaaatattatagttctatgcaattaactaaaattagtctctatatatatgtagtgtaatagactaag-nnnnnnnn |
113 |
Q |
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| T |
44471780 |
agagatactagaatttgttatattaaaatattatagttctatgcaattaactaaaattagtctct----atatgtagtgtaagagactaagttttttttt |
44471685 |
T |
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| Q |
114 |
nngtggacagtgtaagagactaatgtaaatctcatnnnnnnntgtaacttgattattc---atcttttttaaagagatttgtttatttcttagtttttct |
210 |
Q |
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| T |
44471684 |
ttgtggacagtgtaagagactaatgtaaatctcataaaaaaatgtaacttgatcattcaatatattttttaaagaaatttgtttatttcttagtttttct |
44471585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 44476363 - 44476305
Alignment:
| Q |
18 |
gatactagaatttgttatattaaaa-tattatagttctatgcaattaactaaaattagt |
75 |
Q |
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||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
44476363 |
gatactaaaatttgttatattaaaaatattctagttctatgcaattaactaaaattagt |
44476305 |
T |
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